FC875653

Overview
NameFC875653
Unique NameFC875653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF
Sbjct:  225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 345
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFF 346
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VV++RGLP+ C+  +V  FF    I +    V F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VV++RGLP+ C+  +V  FF    I +    V F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH2_HUMAN (Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_DANRE (Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 41/137 (29.93%), Postives = 71/137 (51.82%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            V+R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +         ++         I+R+RGLPF+A  + ++ FF
Sbjct:  226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLK--------IAGGTSNEVASFLSRENQ--------IIVRMRGLPFNATAEQVLQFF 346
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 44/154 (28.57%), Postives = 74/154 (48.05%), Query Frame = 2 
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   +++I+ FF    +  + I + ++
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVD 146
The following BLAST results are available for this feature:
BLAST of FC875653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ESRP1_RAT3.331e-1132.12Epithelial splicing regulatory protein 1 OS=Rattus... [more]
ESRP1_MOUSE3.331e-1132.12Epithelial splicing regulatory protein 1 OS=Mus mu... [more]
ESRP1_HUMAN3.331e-1132.12Epithelial splicing regulatory protein 1 OS=Homo s... [more]
HNRH2_RAT4.351e-1132.37Heterogeneous nuclear ribonucleoprotein H2 OS=Ratt... [more]
HNRH2_MOUSE4.351e-1132.37Heterogeneous nuclear ribonucleoprotein H2 OS=Mus ... [more]
HNRH2_PONAB5.682e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Pong... [more]
HNRH2_HUMAN5.682e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Homo... [more]
ESRP1_DANRE5.682e-1129.93Epithelial splicing regulatory protein 1 OS=Danio ... [more]
HNRH2_BOVIN7.422e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Bos ... [more]
HNRH1_RAT9.693e-1128.57Heterogeneous nuclear ribonucleoprotein H OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC31401D01EF CTVClemen1 Citrus clementina cDNA clone C31401D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875653 ID=FC875653; Name=FC875653; organism=Citrus clementina; type=EST; length=653bp
ATAGCTCACGNGCTCAACTATTTCAAATTTAAGAATGTTCTACAGAGGCA
AGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGGGGCAAAGCGTCAACGG
TTGATTGATCAGGGACCTTCATTTTATGGAACTCCCCCAAGTTCAAGTTT
TATGTACAATCCACCACCAGCTTATGGGTACGTTAGCCAACCTCCACCTT
TCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGATTGTACAGAAGTTGAT
GTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGATGTTCTTTTTGTCCA
TAAGAACAACAAATTTACAGGAGAAGCTTTTTGTGTGCTGGGGTATCCTC
TTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAGAACATGGGAAGGAGG
TATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATATTATAAGGCAATAGC
AAATGAAGTTTCTGATGTTCGTGGTGGTTCACCACATAGGAGTATCCCTA
GGGCTAAATCTCATGATGAGGGGAAGGATTCAGCTGTACATACAGGGATA
CTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAAGGATGACATAATGGA
TTTCTTTAAAGATTTTGTGTTGTCGGAAGACTCGATTCATATTACTATGA
ATT
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