FC875655

Overview
NameFC875655
Unique NameFC875655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.155e-44
Identity = 91/186 (48.92%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG-FLDPVQKLCSGGCD 633
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +  +T + +  L GH+G VW V WAHPKFG+ILAS S+DG V+IW+E +        S  W K   F  H +SVN I WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+LV S   +   ++  +GG D
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRFVTGGSD 193          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.070e-43
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +GHED +HD  +DYYG+RLAT SSD +IK+  +     + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  L C SSDG++SV   + D  W T +I  AH +GV S+SWAP+ APG+L+ +
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVLEFQ-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISA 177          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.308e-43
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            I   H+D +HD  +DYYG+RLAT SSD +IKI  +     + +  L GH+G VW+VAWAHPKFG ILASCS+DG V+IWKE N   W K      H++SVNS+ WAPHE G  L C SSDG IS+   + DGG     + Q H +GV + SWAP + P         D  ++  SGGCD
Sbjct:    4 IGNAHDDLIHDAVLDYYGRRLATCSSDKTIKIFEIDGENQRLVETLIGHEGPVWQVAWAHPKFGVILASCSYDGKVLIWKEDN-GVWNKVAEHSVHQASVNSVSWAPHEYGPVLLCASSDGKISIVEFK-DGGALEPIVIQGHAIGVNAASWAPISLP---------DNTRRFVSGGCD 171          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.308e-43
Identity = 89/180 (49.44%), Postives = 109/180 (60.56%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            I   H++ +HD  +DYYGKRLAT SSD +IKI  V G    Q    L GH+G VW+VAWAHPKFGSILASCS+DG V++WKE     W      + H++SVNS+ WAPHELG  L C SSDG +SV     D G  T  I +AH +GV S SWAP              PV++  +GG D
Sbjct:    4 IANAHDELIHDAVLDYYGKRLATCSSDKTIKIFEVEGTENYQLTETLVGHEGPVWQVAWAHPKFGSILASCSYDGKVLVWKESPDRSWSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFN-DDGTSTHIIFEAHKIGVNSASWAPVDTK---------SPVRRFVTGGSD 173          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.055e-43
Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  121 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +HD  +DYYG+RLAT SSD +IKI  +   T +    L GH GAVW V+WAHPK+G+ILAS  +DG V+IW+E N   W + + F  HK+SVN + W+PHE G  LAC SSDGN+SV   + +  W+ S I  AH +GV SVSWAP+T PG++V S
Sbjct:    2 IHDAVLDYYGRRLATCSSDRTIKIFEIEGETQRLTETLKGHDGAVWCVSWAHPKYGNILASAGYDGKVLIWREQN-GAWQRIYDFSLHKASVNVVSWSPHEAGCVLACASSDGNVSVLEFKDNNSWEHS-IFHAHGLGVNSVSWAPATNPGSIVSS 155          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.017e-42
Identity = 88/161 (54.66%), Postives = 109/161 (67.70%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 567
            I   HED +HD  +DYYGKRLAT SSD +IKI  + G    +  A L+GH+G +W+VAWAHPKFGSILASCS+DG V+IWKE  ++ +W  I +H    H++SVNS+ WAPHELG  L C SSDG +SV     D G  +  I  AH +GV S SWAP TA
Sbjct:    4 IGNAHEDLIHDAVLDYYGKRLATCSSDKTIKIYDIEGTENYKLTATLTGHEGPIWQVAWAHPKFGSILASCSYDGKVLIWKEQQDTQQWSIIAEHTI--HQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFN-DDGTTSHVIFDAHAIGVNSASWAPFTA 161          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.441e-42
Identity = 85/163 (52.15%), Postives = 108/163 (66.26%), Query Frame = 1
Query:  124 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+L+ S
Sbjct:   14 HDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGSTWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLISS 174          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASPCL (Protein transport protein sec13 OS=Aspergillus clavatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.869e-42
Identity = 85/164 (51.83%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  121 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +HD  +DYYG+RLAT SSD +IKI  +   T +    L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +         + W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S
Sbjct:    2 IHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLAETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQSPTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISS 163          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 86/180 (47.78%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            +I   H D +HD  +DYYGK+LAT SSD +IKI  V   + + +  L GH+G VW V WAHPKFG+ILASCS+DG VIIWKE N + W +  V   H +SVNS+ WAPHE G  L   SSDG +SV   + + G  T  I  AH +GV + SWAP+T  G          V++  +GG D
Sbjct:    3 EIANAHNDLIHDAVLDYYGKKLATCSSDKTIKIFEVEGESHKLVDTLVGHEGPVWRVDWAHPKFGTILASCSYDGKVIIWKEEN-DRWSQIAVHAVHTASVNSVQWAPHEYGALLLAASSDGKVSVVEFK-ENGTATPLIFDAHAIGVNAASWAPATVEGGNNPGEAPKEVRRFVTGGAD 180          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASPOR (Protein transport protein sec13 OS=Aspergillus oryzae GN=sec13 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41
Identity = 82/164 (50.00%), Postives = 109/164 (66.46%), Query Frame = 1
Query:  121 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS--------NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW +AWAHPKFG+ILAS S+DG V+IW+E +         N W K   F  H +SVN + WAPHE G  LAC SSDG++SV   + D  W T +I  AH +GV S+SWAP+ +PG+L+ +
Sbjct:    1 MHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLVETLKGHEGAVWCIAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPVAVNTWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFQ-DNSW-THQIFHAHGMGVNSISWAPAASPGSLISA 162          
The following BLAST results are available for this feature:
BLAST of FC875655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEC13_EMENI2.155e-4448.92Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_ASPTN1.070e-4350.00Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_PICPG5.308e-4348.60Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_PICGU5.308e-4349.44Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_CHAGB9.055e-4352.56Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_LODEL2.017e-4254.66Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_ASPFU3.441e-4252.15Protein transport protein sec13 OS=Aspergillus fum... [more]
SEC13_ASPCL5.869e-4251.83Protein transport protein sec13 OS=Aspergillus cla... [more]
SC131_CANGA1.307e-4147.78Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_ASPOR2.913e-4150.00Protein transport protein sec13 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionC31401D03EF CTVClemen1 Citrus clementina cDNA clone C31401D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875655 ID=FC875655; Name=FC875655; organism=Citrus clementina; type=EST; length=634bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATA
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