FC875655

Overview
NameFC875655
Unique NameFC875655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_YEAST (Protein transport protein SEC13 OS=Saccharomyces cerevisiae GN=SEC13 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            I   H + +HD  +DYYGKRLAT SSD +IKI  V   T + +  L+GH+G VW V WAHPKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSDG +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG D
Sbjct:    4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGAD 179          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 86/175 (49.14%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  112 EDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ-KLCSGGCD 633
            ++  HD  +DYYG+RLAT SSD +IKI  V   T +    L GH+GAVW VAWAHPK+G+ILAS  +DG V IW+E     W K   F  HK+SVN + W+PHE G  LAC SSDG++SV   + D  +D      AH  GV SVSWAPSTAPG+++ +      Q +  +GG D
Sbjct:    6 KERAHDAVLDYYGRRLATCSSDRTIKIFEVEGETHRLTETLKGHEGAVWCVAWAHPKYGNILASSGYDGKVFIWRE-QGGAWQKIFDFALHKASVNIVSWSPHESGCLLACASSDGHVSVLEFK-DNSFDHQTF-LAHGQGVNSVSWAPSTAPGSIISTNATPAAQRRFVTGGSD 177          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_KLULA (Protein transport protein SEC13 OS=Kluyveromyces lactis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 85/183 (46.45%), Postives = 109/183 (59.56%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPST----APGALVGSGFLDPVQKLCSGGCD 633
            I   H + +HD  +DYYGKRLAT SSD+++KI  V   T + +  L GH+G VW+V WAHPKFG ILASCS+DG V+IWKE N   W +    E H +SVNSI WAPHE G  L   SSDG +SV   + +G      ID AH +G  +  WAP+T    +     GS     V++  +GG D
Sbjct:    4 INNAHSELIHDAVLDYYGKRLATCSSDHTVKIFEVEGETHKLVDTLQGHEGPVWQVDWAHPKFGVILASCSYDGKVLIWKEVN-GRWSQIAAHEVHSASVNSIQWAPHEYGPLLLAASSDGKVSVVEFKENGTTSPIIID-AHSIGANTACWAPATLQQQSNQGTSGSASPQQVRRFVTGGAD 184          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_CRYNE (Protein transport protein SEC13 OS=Cryptococcus neoformans GN=SEC13 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 89/182 (48.90%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   58 PLV*ALEKMPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQ-HLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-------GNSNE----W--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            PL+ + +   P  +ET HED +HD  +DYYGKRLAT SSD +I+I  V    ++     L GH  AVW+V+WAHP FGSILASCS+DG V IWKE       G+  E    W  IK+H    H +SVNSI WAP++LG  LAC SSDG +SV + + DG  + + I  AH  G  ++SWAPS
Sbjct:    5 PLIQSAQASKPVPVETQHEDMIHDAQLDYYGKRLATCSSDRTIRIFNVIKGEAKGEPVILKGHTAAVWQVSWAHPSFGSILASCSYDGRVFIWKEVGQGQGKGSGGELQDGWERIKEHTL--HTASVNSIAWAPYDLGPILACASSDGKVSVLSFQNDGSIEVN-IFPAHGTGANAISWAPS 183          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 84/179 (46.93%), Postives = 110/179 (61.45%), Query Frame = 1
Query:  109 HEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFLDPVQKLCSGGCD 633
            H+D +HD  +DYYGKRLAT SSD +IKI  +  +  + +  L GH+G VW+V+WAHPKFGSI+AS S+DG V IW+E N   W  I  H    H +SVNS+ WAP E G  L C SSDGN+SV   +  G  + +    AH VG  S SWAP    G+L+   +G      ++ +GGCD
Sbjct:    8 HDDLIHDAVLDYYGKRLATCSSDKTIKIFEIDGDNHKLVETLRGHEGPVWQVSWAHPKFGSIIASASYDGKVFIWREEN-GRWTNIAQH---QHNASVNSVVWAPQEYGPLLLCASSDGNVSVVEFKEGGNCEATTF-AAHDVGANSASWAPPAVSGSLIQPINGKASNNIRIVTGGCD 181          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASHGO (Protein transport protein SEC13 OS=Ashbya gossypii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 84/179 (46.93%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            I   H + +HD  +DYYGKRLAT SSD +I+I  V  ++ + +  L GH+G VW+V WAHPKFG ILASCS+DG V+IWKE N   W +   +E H +SVNS+ WAPHE G  L C SSDG  SV   + +G      ID AH +GV +  WAP+T       S  L   +++ +GG D
Sbjct:    4 ITNAHTELIHDAVLDYYGKRLATCSSDKTIQIFEVDGDSHKLVDSLHGHEGPVWQVDWAHPKFGVILASCSYDGKVLIWKEEN-GRWSQIAAYEVHSASVNSVKWAPHEYGPLLLCSSSDGKFSVVEFKENGTTSPIIID-AHAIGVNAACWAPATIEDDGQQSQHL---RRIATGGAD 177          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_DEBHA (Protein transport protein SEC13 OS=Debaryomyces hansenii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 84/158 (53.16%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 558
            I   H+D +HD  +DYYGKRLAT SSD +IK+  V    +  L + L GH+G VW+VAWAHPKFGSILASCS+DG  +IWKE   + +W  I +H    H++SVNS+ WAPHELG  L C SSDG +SV     D G  +  I  AH +GV S SWAP
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKLFEVEGTENYKLVETLIGHEGPVWQVAWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTV--HQASVNSVSWAPHELGAILLCTSSDGKVSVVDFN-DDGTTSHIIFDAHAIGVNSASWAP 158          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 81/156 (51.92%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 558
            I   H D +HD  +DYYGKRLAT SSD SI I  +    S  L   L+GH G VW+V+WAHPKFGSILASCSFDG  +IWKE   + +W        H++SVNS+ WAPHELG  L C SSDG +SV     D G  +  +  AH +G  S SWAP
Sbjct:    4 IGNAHNDLIHDAVLDYYGKRLATCSSDKSINIFDIDGTESYKLVSTLTGHDGPVWQVSWAHPKFGSILASCSFDGKALIWKEQPETQQWSIIAEHSVHQASVNSVSWAPHELGAVLLCASSDGKVSVVDFN-DDGTTSHVVFDAHAIGANSASWAP 158          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 86/183 (46.99%), Postives = 114/183 (62.30%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            I   H+D +HD  +DYYGKRLAT SSD +IKI  + G +  + +  L+GH+G VW+V+WAHPKFGSILASCS+DG  +IWKE   + +W  I +H    H++SVNS+ WAPHELG  L C SSDG +SV     D G  +  I  AH +G  S +WAP +       S  L   +++ S G D
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKIFDLDGTDNYKLITTLTGHEGPVWQVSWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTV--HQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFN-DDGTTSHVIFDAHAIGANSATWAPVSTSSK--DSAALKQQRRIVSCGSD 181          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_PHANO (Protein transport protein SEC13 OS=Phaeosphaeria nodorum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.036e-38
Identity = 86/172 (50.00%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  124 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS--GFLDPVQKLCSGGCD 633
            HD  +DYYG+RLAT SSD +IKI  V  +    +  L GH+G VW VAWAHPK+G+ILAS S+DG VIIW+E  S+ W K +    H +SVN + WAPHE+G  LAC SSDGN+SV   + D  W +  I QA   GV SVSWAP+ APG +V +        ++  +GG D
Sbjct:   20 HDAVLDYYGRRLATCSSDKTIKIFEVEGDKHTLVETLRGHEGPVWCVAWAHPKYGNILASSSYDGKVIIWRE-QSSTWQKIYEVALHTASVNIVAWAPHEVGCLLACASSDGNVSVLEFK-DNAW-SHVIFQACGSGVNSVSWAPAVAPGQVVSASGNQAGAARRFVTGGSD 188          
The following BLAST results are available for this feature:
BLAST of FC875655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEC13_YEAST1.107e-4048.60Protein transport protein SEC13 OS=Saccharomyces c... [more]
SEC13_MAGGR1.888e-4049.14Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_KLULA1.888e-4046.45Protein transport protein SEC13 OS=Kluyveromyces l... [more]
SEC13_CRYNE4.206e-4048.90Protein transport protein SEC13 OS=Cryptococcus ne... [more]
SEC13_YARLI5.493e-4046.93Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_ASHGO5.493e-4046.93Protein transport protein SEC13 OS=Ashbya gossypii... [more]
SEC13_DEBHA7.174e-4053.16Protein transport protein SEC13 OS=Debaryomyces ha... [more]
SEC13_PICST1.598e-3951.92Protein transport protein SEC13 OS=Pichia stipitis... [more]
SEC13_CANAL1.598e-3946.99Protein transport protein SEC13 OS=Candida albican... [more]
SEC13_PHANO1.036e-3850.00Protein transport protein SEC13 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionC31401D03EF CTVClemen1 Citrus clementina cDNA clone C31401D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875655 ID=FC875655; Name=FC875655; organism=Citrus clementina; type=EST; length=634bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATA
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