FC875657

Overview
NameFC875657
Unique NameFC875657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig47 contig Ccv1_Contig47:207..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A1_HUMAN (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 76/233 (32.62%), Postives = 113/233 (48.50%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGD-SRNDEFYSFPL 700
            GM  A L    ES G + A +R AGA  PP H ++R I  +GI  ++ G+ G+  G+T+S  N+G+LG+T +GSRRVVQ   A M               +P PI   ++C L G++ AVG++ +QF + NS RN              P Y      E   G + TG    + I   + ++   V   +  +LDNT+    +  +RGL  WK   H   D S + + Y FP+
Sbjct:  323 GMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYL-----ESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPG--SPEERGLIQWKAGAHANSDMSSSLKSYDFPI 548          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A2_MOUSE (Solute carrier family 23 member 2 OS=Mus musculus GN=Slc23a2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 73/236 (30.93%), Postives = 118/236 (50.00%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRND-EFYSFPLRIN 709
            GM+ A + +  ES G + A +R + A  PP H ++R I ++G+  +++GIFG+  G+T+S  N+G+LG+T +GSRRV+Q   A M               +P P+  A++C L G++ AVG++ +QF + NS RN              P Y           P+ TG    + I N + ++   V   V  +LDNT+    T  +RG+  WK    +   S +  E Y+ P  +N
Sbjct:  380 GMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAALMLGLGMVGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLR-------QNPLVTGITGIDQILNVLLTTAMFVGGCVAFILDNTIPG--TPEERGIKKWKKGVSKGSKSLDGMESYNLPFGMN 606          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A2_RAT (Solute carrier family 23 member 2 OS=Rattus norvegicus GN=Slc23a2 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.014e-28
Identity = 73/241 (30.29%), Postives = 120/241 (49.79%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRND------EFYSFPLRIN 709
            GM+ A + +  ES G + A +R + A  PP H ++R I ++G+  +++G+FG+  G+T+S  N+G+LG+T +GSRRV+Q   A M               +P P+  A++C L G++ AVG++ +QF + NS RN              P Y           P+ TG    + + N + ++   V   V  +LDNT+    T  +RG+  WK     KG S+ +      E Y+ P  +N
Sbjct:  379 GMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGVFGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAALMLGLGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLR-------QNPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPG--TPEERGIKKWK-----KGVSKGNKSLDGMESYNLPFGMN 605          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A2_HUMAN (Solute carrier family 23 member 2 OS=Homo sapiens GN=SLC23A2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 74/237 (31.22%), Postives = 119/237 (50.21%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRND--EFYSFPLRIN 709
            GM+ A + +  ES G + A +R + A  PP H ++R I ++G+  +++GIFG+  G+T+S  N+G+LG+T +GSRRV+Q   A M               +P P+  A++C L G++ AVG++ +QF + NS RN              P Y           P+ TG    + + N + ++   V   V  +LDNT+    T  +RG+  WK     KG+   D  E Y+ P  +N
Sbjct:  382 GMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQCGAALMLALGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLR-------QNPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPG--TPEERGIRKWKK-GVGKGNKSLDGMESYNLPFGMN 608          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A1_MOUSE (Solute carrier family 23 member 1 OS=Mus musculus GN=Slc23a1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 74/232 (31.90%), Postives = 111/232 (47.84%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGD-SRNDEFYSFP 697
            GM  A L    ES G + A +R AGA  PP H ++R I  +GI  ++ G+ G+  G+T+S  N+G+LG+T +GSRRVVQ     M               +P PI   ++C L G++ AVG++ +QF + NS RN              P Y  S       G + TG    + I   + ++   V   +  +LDNT+    +  +RGL  WK   H   + S + + Y FP
Sbjct:  330 GMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAGIMLILGAIGKFTALFASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLDSNP-----GAINTGIPEVDQILTVLLTTEMFVGGCLAFILDNTVPG--SPEERGLIQWKAGAHANSETSASLKSYDFP 554          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A2_XENTR (Solute carrier family 23 member 2 OS=Xenopus tropicalis GN=slc23a2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.332e-27
Identity = 65/213 (30.52%), Postives = 108/213 (50.70%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWK 643
            GM+ A + +  ES G + A +R + A  PP H ++R I ++G+  +++G+FG+  G+T+S  N+G+LG+T + SRRV+Q   AFM               +P P+  A++C L G++ AVG++ +QF + NS RN              P Y           P+ TG    + + N + ++   V      +LDNT+    T  +RG+  WK
Sbjct:  380 GMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFIEGLSCVLDGVFGTGNGSTSSSPNIGVLGITKVASRRVIQYGAAFMLLLGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFVDLNSSRNLFVLGFSIFFGLMLPSYLK-------QNPLVTGIAEIDQVLNVLLTTAMFVGGCTAFILDNTIPG--TPEERGIRKWK 583          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A1_RAT (Solute carrier family 23 member 1 OS=Rattus norvegicus GN=Slc23a1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.045e-27
Identity = 72/232 (31.03%), Postives = 111/232 (47.84%), Query Frame = 2
Query:    5 GMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDS-RNDEFYSFP 697
            GM  A L    ES G + A +R AGA  PP H ++R I  +G+  ++ G+ G+  G+T+S  N+G+LG+T +GSRRVVQ     M               +P PI   ++C L G++ AVG++ +QF + NS RN              P Y  S       G + TG    + I   + ++   V   +  +LDNT+    +  +RGL  WK   H   ++  + + Y FP
Sbjct:  330 GMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGVCCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAGIMLILGAIGKFTALFASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLDSNP-----GAINTGVPEVDQILTVLLTTEMFVGGCLAFILDNTVPG--SPEERGLIQWKAGAHANSETLASLKSYDFP 554          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: NAT12_ARATH (Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 60/254 (23.62%), Postives = 111/254 (43.70%), Query Frame = 2
Query:    2 FGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTE----------------DGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRNDEFYSFPLRINEY 715
            F M   +++ S +S G++ A+S    +  P   V+SR+IGL+G   ++ G++G+  G+T   ENV  + +T +GSRRVV++    +               IP  + A++ C +  +  A+G++ ++++   S RN              P YF                        HGP ++     N + NT+ S    +A I+  +LDNT+    +  +RG+  W   +    +    + Y  P R+  +
Sbjct:  449 FVMCVVSVIASVDSVGSYHASSLLVASRPPTRGVVSRAIGLEGFTSVLAGLWGTGTGSTTLTENVHTIAVTKMGSRRVVELGACVLVIFSLVGKVGGFLASIPQVMVASLLCFMWAMFTALGLSNLRYSEAGSSRNIIIVGLSLFFSLSVPAYFQQYGISPNSNLSVPSYYQPYIVSSHGPFKSQYKGMNYVMNTLLSMSMVIAFIMAVILDNTVPG--SKQERGVYVWSDSETATREPALAKDYELPFRVGRF 700          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: NAT11_ARATH (Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 61/244 (25.00%), Postives = 102/244 (41.80%), Query Frame = 2
Query:    8 MIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTT--------------EDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRNDEFYSFP 697
            MI  +LV S +S GT+ +AS    A  P   ++SR I L+G   L+ GI+GS  G+T   EN+  + +T + SRR + I   F+               IP  + A++ C +  +  ++G++ +++    S RN              P YF                       GP +TG  + +   N + S    V  ++  +LDNT+    +  +RG+  W   +  + D      YS P
Sbjct:  456 MIFVSLVASVDSVGTYHSASMIVNAKRPTRGIVSRGIALEGFCSLLAGIWGSGTGSTTLTENIHTINITKVASRRALVIGAMFLIVLSFLGKLGAILASIPQALAASVLCFIWALTVSLGLSNLRYTQTASFRNITIVGVSLFLGLSIPAYFQQYQPLSSLILPSYYIPFGAASSGPFQTGIEQLDFAMNAVLSLNMVVTFLLAFILDNTVPG--SKEERGVYVWTRAEDMQMDPEMRADYSLP 697          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A3_MOUSE (Solute carrier family 23 member 3 OS=Mus musculus GN=Slc23a3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 55/207 (26.57%), Postives = 90/207 (43.48%), Query Frame = 2
Query:   11 IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGL 631
            I  AL  S  S G +    +    + PP H  SR + L+G+G ++ G+ GS +GT +S  NVG + L   GSRRV  +   F                IPLP+   +  V   +V + G +    A+ +S RN              P++       +    + TG    +    ++ + P  +A ++G +L+NT+    T A+RGL
Sbjct:  324 ISMALAASTSSLGCYALCGQLLRLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWL-----REAPVLLNTGWSPLDMFLRSLLAEPIFLAGLLGFLLENTISG--TRAERGL 523          
The following BLAST results are available for this feature:
BLAST of FC875657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
S23A1_HUMAN2.109e-2832.62Solute carrier family 23 member 1 OS=Homo sapiens ... [more]
S23A2_MOUSE4.698e-2830.93Solute carrier family 23 member 2 OS=Mus musculus ... [more]
S23A2_RAT8.014e-2830.29Solute carrier family 23 member 2 OS=Rattus norveg... [more]
S23A2_HUMAN1.047e-2731.22Solute carrier family 23 member 2 OS=Homo sapiens ... [more]
S23A1_MOUSE1.367e-2731.90Solute carrier family 23 member 1 OS=Mus musculus ... [more]
S23A2_XENTR2.332e-2730.52Solute carrier family 23 member 2 OS=Xenopus tropi... [more]
S23A1_RAT3.045e-2731.03Solute carrier family 23 member 1 OS=Rattus norveg... [more]
NAT12_ARATH2.337e-1923.62Nucleobase-ascorbate transporter 12 OS=Arabidopsis... [more]
NAT11_ARATH9.819e-1825.00Nucleobase-ascorbate transporter 11 OS=Arabidopsis... [more]
S23A3_MOUSE9.190e-1626.57Solute carrier family 23 member 3 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC31401D05EF CTVClemen1 Citrus clementina cDNA clone C31401D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875657 ID=FC875657; Name=FC875657; organism=Citrus clementina; type=EST; length=724bp
CTTTGGGATGATAGGAGCAGCACTTGTAACATCTGCAGAGTCAACTGGAA
CATTTATCGCAGCATCACGGTTTGCAGGTGCTACAGCTCCTCCAGCACAT
GTCCTCAGCCGAAGTATTGGCCTGCAGGGTATTGGCATGCTGGTTGAAGG
AATTTTTGGTTCTGTTGTTGGTACTACTGCATCTGTGGAAAATGTTGGCC
TTCTCGGACTAACACACATAGGCAGCAGAAGAGTGGTGCAGATTTCAACT
GCGTTCATGATATTTTTCTCCATATTTGGGAAGTTTGGTGCCTTCTTTGC
ATCCATTCCATTGCCAATATTTGCTGCCATATACTGTGTTCTATTAGGCA
TAGTTGCTGCTGTTGGGATTACTTTCATACAGTTTGCAAATAATAATTCC
ATGAGAAACATTTATATTTTGGGCCTCTCTCTGTTCCTTGGCATATCAAT
TCCTCAATACTTTGCCTCGAAAACCACTGAGGATGGTCATGGGCCAGTTA
GAACGGGTGGTGGACGGTTTAATGACATATGGAACACAATCTTTTCATCA
CCTCCAACCGTAGCAATGATCGTTGGGACAGTGCTAGATAACACACTTGA
TGCAAGAGATACAGTTGCCGACAGAGGACTCCCCTGGTGGAAACCCTTCC
AGCACAGGAAGGGCGACTCTAGAAATGACGAGTTCTACAGTTTTCCCCTT
AGGATAAATGAGTATATCCCCCAC
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