FC875657

Overview
NameFC875657
Unique NameFC875657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: S23A3_HUMAN (Solute carrier family 23 member 3 OS=Homo sapiens GN=SLC23A3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 56/209 (26.79%), Postives = 90/209 (43.06%), Query Frame = 2
Query:   11 IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYFASKTTEDGHGPV--RTGGGRFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGL 631
            I  AL  S  S G +    R      PP H  SR + L+G+G ++ G+ GS +GT +S  NVG +GL   GS++V  +                    IPLP+   +  V   +V + G +    A+ +S RN              P++F          PV   TG    + + +++ + P  +A + G +L+NT+    T  +RGL
Sbjct:  321 ISMALAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHLVGLLCVGLGLSPRLAQLLTTIPLPVVGGVLGVTQAVVLSAGFSSFYLADIDSGRNIFIVGFSIFMALLLPRWFR-------EAPVLFSTGWSPLDVLLHSLLTQPIFLAGLSGFLLENTIPG--TQLERGL 520          
BLAST of FC875657 vs. ExPASy Swiss-Prot
Match: NAT9_ARATH (Putative nucleobase-ascorbate transporter 9 OS=Arabidopsis thaliana GN=NAT9 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 50/154 (32.47%), Postives = 68/154 (44.16%), Query Frame = 2
Query:    2 FGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXXPQYF 463
            F M+ A+ VT  ESTG F A++R+                                      +NVGLL +T +GSRRV+QIS AFM               IPLPI A++YC++L  V++ G++F+QF N NS                 PQYF
Sbjct:  274 FAMMAASFVTLFESTGLFYASARYG-------------------------------------KNVGLLAMTKVGSRRVIQISAAFMLFFSIFGKFGAFFASIPLPIMASLYCIVLCFVSSAGLSFLQFCNLNSFNTKFILGFSFFMAISIPQYF 390          
The following BLAST results are available for this feature:
BLAST of FC875657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
S23A3_HUMAN7.780e-1526.79Solute carrier family 23 member 3 OS=Homo sapiens ... [more]
NAT9_ARATH7.780e-1532.47Putative nucleobase-ascorbate transporter 9 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC31401D05EF CTVClemen1 Citrus clementina cDNA clone C31401D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875657 ID=FC875657; Name=FC875657; organism=Citrus clementina; type=EST; length=724bp
CTTTGGGATGATAGGAGCAGCACTTGTAACATCTGCAGAGTCAACTGGAA
CATTTATCGCAGCATCACGGTTTGCAGGTGCTACAGCTCCTCCAGCACAT
GTCCTCAGCCGAAGTATTGGCCTGCAGGGTATTGGCATGCTGGTTGAAGG
AATTTTTGGTTCTGTTGTTGGTACTACTGCATCTGTGGAAAATGTTGGCC
TTCTCGGACTAACACACATAGGCAGCAGAAGAGTGGTGCAGATTTCAACT
GCGTTCATGATATTTTTCTCCATATTTGGGAAGTTTGGTGCCTTCTTTGC
ATCCATTCCATTGCCAATATTTGCTGCCATATACTGTGTTCTATTAGGCA
TAGTTGCTGCTGTTGGGATTACTTTCATACAGTTTGCAAATAATAATTCC
ATGAGAAACATTTATATTTTGGGCCTCTCTCTGTTCCTTGGCATATCAAT
TCCTCAATACTTTGCCTCGAAAACCACTGAGGATGGTCATGGGCCAGTTA
GAACGGGTGGTGGACGGTTTAATGACATATGGAACACAATCTTTTCATCA
CCTCCAACCGTAGCAATGATCGTTGGGACAGTGCTAGATAACACACTTGA
TGCAAGAGATACAGTTGCCGACAGAGGACTCCCCTGGTGGAAACCCTTCC
AGCACAGGAAGGGCGACTCTAGAAATGACGAGTTCTACAGTTTTCCCCTT
AGGATAAATGAGTATATCCCCCAC
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