FC875659

Overview
NameFC875659
Unique NameFC875659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875659_ssr413 microsatellite FC875659_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10288 contig Ccv1_Contig10288:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL++ T +  L   F  YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + F+GGL + T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + F+GGL + T +  L +AF  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 330
            R +VG L+W   D +L   F   G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 33/77 (42.86%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 330
            R +VG L+W   D +L   F   G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL + T + +L + F ++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   94 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            E + FVGGL + T + +L + F ++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of FC875659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CIRBP_RANCA3.286e-1550.00Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_RAT4.292e-1548.72Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE4.292e-1548.72Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR4.292e-1548.72Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA7.321e-1548.72Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA1.249e-1448.72Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC2_ARATH2.130e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH2.130e-1442.86Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE2.782e-1447.44Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RBM3_RAT8.094e-1446.15Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC31401D07EF CTVClemen1 Citrus clementina cDNA clone C31401D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875659 ID=FC875659; Name=FC875659; organism=Citrus clementina; type=EST; length=696bp
GATTTTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTCTT
AGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTTTA
GGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCAT
GAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAACGA
TCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATG
AGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCGAC
GGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCGG
TGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGTG
GACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGATAC
GGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTACAG
CCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCG
GTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAATT
AGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGTTG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGNTTCGATCTCCC
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