FC875659

Overview
NameFC875659
Unique NameFC875659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875659_ssr413 microsatellite FC875659_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10288 contig Ccv1_Contig10288:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBY1A_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   76 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 330
            MA  +   + F+GGL   T   +L E FG +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  100 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 327
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RMXL3_PANTR (RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   76 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITV 318
            M   D   + FVGGL   T + +L   FG YG I++  +I DR+T +SRGF FVTF      + A   MNG+ LDG+ I V
Sbjct:    1 MMEADRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81          
BLAST of FC875659 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   88 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 312
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
The following BLAST results are available for this feature:
BLAST of FC875659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM38_XENTR2.879e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBM38_MOUSE3.760e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE3.760e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
RBY1A_MOUSE4.910e-1140.00RNA-binding motif protein, Y chromosome, family 1 ... [more]
YHKF_SCHPO6.413e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN6.413e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RMXL3_PANTR8.376e-1143.21RNA-binding motif protein, X-linked-like-3 OS=Pan ... [more]
RB27C_DROME8.376e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionC31401D07EF CTVClemen1 Citrus clementina cDNA clone C31401D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875659 ID=FC875659; Name=FC875659; organism=Citrus clementina; type=EST; length=696bp
GATTTTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTCTT
AGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTTTA
GGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCAT
GAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAACGA
TCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATG
AGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCGAC
GGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCGG
TGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGTG
GACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGATAC
GGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTACAG
CCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCG
GTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAATT
AGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGTTG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGNTTCGATCTCCC
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