FC875660

Overview
NameFC875660
Unique NameFC875660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875660_ssr24 microsatellite FC875660_ssr24:24..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9776 contig Ccv1_Contig9776:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 5.406e-82
Identity = 148/179 (82.68%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EA +EL +ML EDELRDAVLLVFANKQDLPNAM  +E+TDKL L +LR R WY+Q+TCAT G GLYEGLDWLS  L K
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 147/179 (82.12%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS  L K
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 147/179 (82.12%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS  L K
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 147/179 (82.12%), Postives = 160/179 (89.39%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS  L K
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.683e-81
Identity = 145/179 (81.01%), Postives = 161/179 (89.94%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ +EL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY+Q+TCAT G GLY+GLDWLS  L K
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 300.827 bits (769), Expect = 4.577e-81
Identity = 146/179 (81.56%), Postives = 159/179 (88.83%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLS  L K
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 300.827 bits (769), Expect = 4.577e-81
Identity = 146/179 (81.56%), Postives = 159/179 (88.83%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLS  L K
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.271e-80
Identity = 146/179 (81.56%), Postives = 158/179 (88.27%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLS  L K
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.271e-80
Identity = 146/179 (81.56%), Postives = 158/179 (88.27%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQK 625
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLS  L K
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179
[Close]
BLAST of FC875660 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 298.13 bits (762), Expect = 2.967e-80
Identity = 137/177 (77.40%), Postives = 167/177 (94.35%), Query Frame = 2 
Query:   89 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTL 619
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+T L
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177
The following BLAST results are available for this feature:
BLAST of FC875660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF4_XENLA5.406e-8282.68ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_RAT7.061e-8282.12ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE7.061e-8282.12ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN7.061e-8282.12ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF5_CHICK2.683e-8181.01ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_PONAB4.577e-8181.56ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN4.577e-8181.56ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF4_RAT2.271e-8081.56ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.271e-8081.56ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF1_PLAFA2.967e-8077.40ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC31401D09EF CTVClemen1 Citrus clementina cDNA clone C31401D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875660 ID=FC875660; Name=FC875660; organism=Citrus clementina; type=EST; length=704bp
GGAAGGACAGCTCTTATTTTTATAGAGAGAGAGAGGGGCAGTAGATCTGC
ACCAAGGCAAAAACCGCTCTCTTCCTCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGGGGTCA
AGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACACCCAAGGAC
TCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTAGAAGCTAGG
GATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGATGCTGTGCT
GCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTG
AGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTAT
ATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGA
CTGGCTCTCAACAACATTGCAAAAAGGCATAGACAACTAAATTTTGAGTT
TTGGGTTGCCGCAACTGCTGAAATACAGAGTTAACACACATCTCAAGTGT
CTTG
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