FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PROM1 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=metK PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.457e-33
Identity = 70/123 (56.91%), Postives = 91/123 (73.98%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGLDADHCKVLVNIEQQSPDIAQGVH---GHLTKRPEEIG 530
            M  ++FTSESV EGHPDK+CDQVSDAVLDACL++DP S+VACE    T +  + GEIT+KA VD+ K+VR+  +SIG+ SA D G DA+ C VLV ++QQS DIAQGV+    H T   +++G
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKSIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVG 123          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PROMH (S-adenosylmethionine synthetase OS=Proteus mirabilis (strain HI4320) GN=metK PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.821e-33
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M T LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT MV V GEITTKA VD E+I R T R IG+TS+D+G DA+ C V+  I +QSPDI QGV
Sbjct:    1 MTTHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTKAWVDIEEITRKTVREIGYTSSDMGFDANSCAVISAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.821e-33
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV EGHPDK+CDQ+SDA+LDA L +DP+++VACET   T +V V GEITT   VD  KIVRDT R IG+T A  G DAD C VL +I++QSPDIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAR 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.929e-33
Identity = 69/123 (56.10%), Postives = 91/123 (73.98%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGLDADHCKVLVNIEQQSPDIAQGVH---GHLTKRPEEIG 530
            M  ++FTSESV EGHPDK+CDQVSDAVLDACL++DP S+VACE    T +  + GEIT+KA VD+ K+VR+  ++IG+ SA D G DA+ C VLV ++QQS DIAQGV+    H T   +++G
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVG 123          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LACRJ (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.929e-33
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T +V VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.929e-33
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T +V VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.297e-32
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M  + GEITT A +DY KIVR+T R IG+  + +G D + C VL +I++QSPDIAQGV
Sbjct:    3 MKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETMVTTGMAVIAGEITTNAIIDYPKIVRETIREIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.297e-32
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV EGHPDK+CDQ+SDA+LDA L +DP+++VACET   T +V V GEITT   VD  +IVRDT R IG+T A  G DAD C VL +I++QSPDIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDRALEAR 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.694e-32
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M  V GEITT A VDY KIVR+T + IG+  + +G D + C VL +I++QSPDIAQGV
Sbjct:    3 MKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETLVTTGMTVVAGEITTNAIVDYPKIVRETIKEIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E+I R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROM14.457e-3356.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROMH5.821e-3366.36S-adenosylmethionine synthetase OS=Proteus mirabil... [more]
METK_GEOSW5.821e-3362.73S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_PROMT9.929e-3356.10S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LACRJ9.929e-3358.62S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_LACRD9.929e-3358.62S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_GEOSM1.297e-3261.68S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_GEOKA1.297e-3261.82S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_GEOUR1.694e-3262.62S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK_SHEB92.889e-3265.42S-adenosylmethionine synthetase OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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