FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E+I R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E+I R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEB2 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS223) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E+I R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT MV V GE+TT A VD E++ R+T R IG+T +D+G DAD C VL  I +QSPDI QGV      RPE+ G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILKQDPKARVACETYVKTGMVMVGGEVTTNAWVDIEELTRNTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RTRPEDQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 68/110 (61.82%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV EGHPDK+CDQ+SDA+LDA L +DP+++VACET   T +V V GEITT   VD  +IVRDT R IG+T A  G DAD C VL  I++QSPDIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKFGFDADTCAVLTAIDEQSPDIAMGVDQALEAR 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_METFK (S-adenosylmethionine synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=metK PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.773e-32
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SD++LDA L QDP ++VA ET T T +V + GEITT ANVDY KI RDT + IG+ +AD G+D   C VLV  ++QSPDIAQGV+
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDSILDAILEQDPTARVAAETLTNTGLVVLAGEITTTANVDYIKIARDTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGVN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GLOVI (S-adenosylmethionine synthetase OS=Gloeobacter violaceus GN=metK PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.773e-32
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            M  +LF+SESV EGHPDK+CDQ+SD +LDA L QDP S+VA E    T MV V GEITT ANV++ K+VRD  R IG+T AD G  AD C V + +++QSP+IAQGV   L  R  E
Sbjct:    1 MSRYLFSSESVTEGHPDKICDQISDTILDALLTQDPRSRVAAEVVVNTGMVVVTGEITTTANVNFTKLVRDKIREIGYTEADNGFSADSCAVFLALDEQSPEIAQGVSCALEVRTSE 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.773e-32
Identity = 65/110 (59.09%), Postives = 83/110 (75.45%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV EGHPDK+CDQ+SD++LD  L +DP+++VACET   T +V V GEITT   VD  K+VRDT R+IG+T A  G D++ C VL +I++QSPDIAQGV+  L  R
Sbjct:    9 LFTSESVTEGHPDKICDQISDSILDEILKEDPNARVACETSVTTGLVLVAGEITTSTYVDIPKVVRDTIRNIGYTRAKYGFDSETCAVLTSIDEQSPDIAQGVNQALEAR 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHESW (S-adenosylmethionine synthetase OS=Shewanella sp. (strain W3-18-1) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E++ R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEPC (S-adenosylmethionine synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LAQDP ++VACET  KT MV V GE+TT A VD E++ R T R IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHEB82.889e-3265.42S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB52.889e-3265.42S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB22.889e-3265.42S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_PSEA62.889e-3260.50S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_GEOTN2.889e-3261.82S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_METFK3.773e-3261.11S-adenosylmethionine synthetase OS=Methylobacillus... [more]
METK_GLOVI3.773e-3257.26S-adenosylmethionine synthetase OS=Gloeobacter vio... [more]
METK_BACHD3.773e-3259.09S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_SHESW4.927e-3264.49S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHEPC4.927e-3264.49S-adenosylmethionine synthetase OS=Shewanella putr... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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