FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_GEOMG (S-adenosylmethionine synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M+ ++FTSESV+EGHPDK+ DQVSD++LDA LAQDP ++VACET   T M  + GEITT A VDY K+VR+T R IG+  + +G D + C VLV+I++QSPDI+QGV
Sbjct:    3 MKDYIFTSESVSEGHPDKVADQVSDSILDAILAQDPRARVACETLVTTGMAVIAGEITTSAVVDYPKVVRETIREIGYNDSAMGFDWETCAVLVSIDKQSPDISQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 527
            LFTSESV EGHPDK+ DQ+SDAVLDA LAQDP ++VACET   T +V V GEITT   VD  K+VR+T R IG+T A  G D D C V+ +I++QSPDIA GV+  L  +  E+
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAILAQDPQARVACETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFDGDTCAVITSIDEQSPDIALGVNRALEAKTGEM 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV EGHPDK+CDQ+SDAVLDA L +DP ++VACE    T +V V GEITTK  VD  KI RDT R IG+T A  G DAD C V+ +I++QSPDIA GV
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILEKDPYARVACEVAVTTGLVLVMGEITTKCYVDIPKIARDTIREIGYTRAKYGFDADTCAVITSIDEQSPDIAMGV 106          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV EGHPDK+CDQ+SDAVLDA L +DP ++VACE    T +V V GEITTK  VD  KI RDT R IG+T A  G DAD C V+ +I++QSPDIA GV
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILEKDPYARVACEVAVTTGLVLVMGEITTKCYVDIPKIARDTIREIGYTRAKYGFDADTCAVITSIDEQSPDIAMGV 106          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SHEFN (S-adenosylmethionine synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=metK PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.436e-32
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT MV V GE+TT A VD E+I R T R IG+T++D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTNSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_RHOBA (S-adenosylmethionine synthetase OS=Rhodopirellula baltica GN=metK PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.436e-32
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            FLFTSESV+ GHPDKL D++SD++LDA LAQDP S+VACET   T +  + GEI++KA+VDYEKIVRDT  ++G+   D+G+D   C+V + ++ QSPDIAQGV+
Sbjct:    8 FLFTSESVSMGHPDKLADRISDSILDALLAQDPHSRVACETLVTTGLAVIAGEISSKADVDYEKIVRDTIVAVGYDDPDIGIDGKTCEVQIRLDAQSPDIAQGVN 112          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LACSS (S-adenosylmethionine synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=metK PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.436e-32
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP ++VACET   T +V V GEI+T A VD +K+VR+T + IG+     G D D+C V+V +++QSPDIAQGV   L  R ++
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLEQDPQARVACETTVTTGLVLVVGEISTTAYVDIQKVVRETIKKIGYRDGQYGFDGDNCAVIVALDEQSPDIAQGVDDSLESREKD 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ALTMD (S-adenosylmethionine synthetase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=metK PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.436e-32
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M T LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT MV V GE+TT A VD E++ R+T + IG+T +D+G DAD C VL  I +QSPDI QGV
Sbjct:    1 MATHLFTSESVSEGHPDKIADQISDAVLDAILEQDPRARVACETYVKTGMVLVGGEVTTSAWVDIEELTRNTVKEIGYTHSDMGFDADSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PHOLL (S-adenosylmethionine synthetase OS=Photorhabdus luminescens subsp. laumondii GN=metK PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.405e-32
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M T+LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT MV V GEITT A VD E+I R T R IG+ ++++G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MTTYLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRQTVREIGYVNSEMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LISW6 (S-adenosylmethionine synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=metK PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.405e-32
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV++GHPDK+ DQ+SDA+LDA +++DPD++VACET   T +V V GEITT   VD  KIVRDT + IG+T A  G DA+ C VL  I++QSPDIAQGV   L  R
Sbjct:    7 LFTSESVSDGHPDKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQSPDIAQGVDEALESR 116          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_GEOMG4.927e-3259.81S-adenosylmethionine synthetase OS=Geobacter metal... [more]
METK_CARHZ4.927e-3258.77S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_CALS84.927e-3264.08S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_ANATD4.927e-3264.08S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_SHEFN6.436e-3264.49S-adenosylmethionine synthetase OS=Shewanella frig... [more]
METK_RHOBA6.436e-3259.05S-adenosylmethionine synthetase OS=Rhodopirellula ... [more]
METK_LACSS6.436e-3255.17S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_ALTMD6.436e-3263.55S-adenosylmethionine synthetase OS=Alteromonas mac... [more]
METK_PHOLL8.405e-3263.55S-adenosylmethionine synthetase OS=Photorhabdus lu... [more]
METK_LISW68.405e-3260.00S-adenosylmethionine synthetase OS=Listeria welshi... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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