FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LEPCP (S-adenosylmethionine synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET T T +V + GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DESMR (S-adenosylmethionine synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            +LF+SESV EGHPDK+ DQ+SD +LDA LAQDPD+ VACET   T +  + GEITTKA  D+  IVR+T + IG+ S+ +G D + C V+ ++++QS DIAQGV      +PE+ G
Sbjct:    8 YLFSSESVTEGHPDKVADQISDGILDAILAQDPDAHVACETLVTTGLAFIAGEITTKAYADFPSIVRETVKEIGYNSSTMGFDWETCAVISSVDKQSVDIAQGVS---RTKPEDQG 120          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACISJ (S-adenosylmethionine synthetase OS=Acidovorax sp. (strain JS42) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET T T +V + GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIQRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  +FTSESV+EGHPDK+ DQ+SDA+LDA L +DP ++VACET  KT  V + GEITT AN+D E +VR T   IG+  +D+G D   C V+  I +QSP+IAQGV     ++PE+ G
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIBT (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=metK PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  +FTSESV+EGHPDK+ DQ+SDA+LDA L +DP ++VACET  KT  V + GEITT AN+D E +VR T   IG+  +D+G D   C V+  I +QSP+IAQGV     ++PE+ G
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIBS (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain SDF) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  +FTSESV+EGHPDK+ DQ+SDA+LDA L +DP ++VACET  KT  V + GEITT AN+D E +VR T   IG+  +D+G D   C V+  I +QSP+IAQGV     ++PE+ G
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIBC (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain ACICU) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  +FTSESV+EGHPDK+ DQ+SDA+LDA L +DP ++VACET  KT  V + GEITT AN+D E +VR T   IG+  +D+G D   C V+  I +QSP+IAQGV     ++PE+ G
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPM (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M28 GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+TKA +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTKAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_NITOC (S-adenosylmethionine synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  189 FTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHL 506
            FTSESV+EGHPDK+ DQ+SD +LDA LAQD  ++VACET  KT MV V GEITT+A++DYE+I+R+T   IG+  +++G D   C V+  I +QS DIAQGV   L
Sbjct:    7 FTSESVSEGHPDKVADQISDVILDAILAQDRRARVACETLVKTGMVLVAGEITTQAHIDYEQIIRETITEIGYNHSEIGFDGATCAVVNAIGKQSSDIAQGVDREL 112          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BURVG (S-adenosylmethionine synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            + FTSESV+EGHPDK+ DQ+SDA+LDA L QD  S+VA ET   T +V + GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LEPCP6.660e-2958.65S-adenosylmethionine synthetase OS=Leptothrix chol... [more]
METK_DESMR6.660e-2952.59S-adenosylmethionine synthetase OS=Desulfovibrio m... [more]
METK_ACISJ6.660e-2958.65S-adenosylmethionine synthetase OS=Acidovorax sp. ... [more]
METK_ACIBY6.660e-2953.39S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBT6.660e-2953.39S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBS6.660e-2953.39S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBC6.660e-2953.39S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_STRPM8.698e-2955.75S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_NITOC8.698e-2957.55S-adenosylmethionine synthetase OS=Nitrosococcus o... [more]
METK_BURVG8.698e-2958.65S-adenosylmethionine synthetase OS=Burkholderia vi... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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