FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK 512
            +FTSESV+EGHPDK+ DQ+SDA+LDA LA+DP ++VACET  KT MV V GEITT A VD E I R+  + IG+ S+D+G D   C VL  I +QS DIAQGV    TK
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK 113          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M ++LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT +  + GEITT A VD E + R     IG+ S+DVG D   C VL  I +QSPDI QGV     K+ EE G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_XYLFM (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M12) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M ++LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT +  + GEITT A VD E + R     IG+ S+DVG D   C VL  I +QSPDI QGV     K+ EE G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_XYLFA (S-adenosylmethionine synthetase OS=Xylella fastidiosa GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M ++LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT +  + GEITT A VD E + R     IG+ S+DVG D   C VL  I +QSPDI QGV     K+ EE G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M ++LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT +  + GEITT A VD E + R     IG+ S+DVG D   C VL  I +QSPDI QGV     K+ EE G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_TRIEI (S-adenosylmethionine synthetase OS=Trichodesmium erythraeum (strain IMS101) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            +LFTSESV EGHPDK+CDQ+SD ++DA LAQDP S+VA E    T +V + GEITTKA V+Y ++ R     IG+  A+ G  AD C VLV +++QS DIAQGV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTIIDAILAQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYIELARKKIADIGYVHAENGFSADSCSVLVALDEQSADIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_RALPJ (S-adenosylmethionine synthetase OS=Ralstonia pickettii (strain 12J) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            FLFTSESV+EGHPDK+ DQ+SDA+LDA LAQD  ++VA ET   T +V + GEITT ANVDY  + R+T + IG+ + + G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIHVARETIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PSEFS (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain SBW25) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA +A+D  ++VACET  KT +  + GE+TT A VD E+IVRD    IG+TS+DVG D   C V+  I +QSPDI QGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKFARVACETLVKTGVAIIAGEVTTTAWVDLEQIVRDVITDIGYTSSDVGFDGATCGVMNIIGKQSPDINQGVD---RAKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PROM4 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9211) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGV 494
            M  F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP S+VACE    T +  + GE+T+ A VD+  +VR   + IG+  A   G DA+ C VLV +++QSPDIA+GV
Sbjct:    1 MSQFVFTSESVTEGHPDKICDQISDAVLDALLTQDPHSRVACEAVVNTGLCLITGEVTSTAEVDFINLVRSVIKEIGYKDAQAGGFDANSCAVLVALDKQSPDIAKGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_IDILO (S-adenosylmethionine synthetase OS=Idiomarina loihiensis GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA LA+DP ++VACET  KT MV V GEI+TKA VD E + R T + IG+  +D+G D   C VL  I +QS DI QGV       PEE G
Sbjct:    1 MSRHLFTSESVSEGHPDKIADQISDAVLDAILAKDPKARVACETYVKTGMVLVGGEISTKAWVDVEDLARQTVKDIGYRHSDMGFDGASCAVLNAIGKQSGDINQGVD---RANPEEQG 116          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_AMOPS8.698e-2959.63S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_XYLFT1.136e-2856.30S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFM1.136e-2856.30S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFA1.136e-2856.30S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF21.136e-2856.30S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_TRIEI1.136e-2856.73S-adenosylmethionine synthetase OS=Trichodesmium e... [more]
METK_RALPJ1.136e-2858.65S-adenosylmethionine synthetase OS=Ralstonia picke... [more]
METK_PSEFS1.136e-2855.93S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PROM41.136e-2855.56S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_IDILO1.136e-2857.14S-adenosylmethionine synthetase OS=Idiomarina loih... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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