FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DESVV (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            + FTSESV EGHPDK+ DQ+SDAVLD  LAQDP+S+VACET   T M  + GEITT+   D   +VR+T R+IG+ S+++G D   C V+ +I++QS DIAQGV
Sbjct:    8 YYFTSESVTEGHPDKVADQISDAVLDVLLAQDPNSRVACETLVTTGMAVIAGEITTRGYADLPHVVRETIRNIGYNSSEMGFDWQTCAVISSIDKQSADIAQGV 111          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DESVH (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            + FTSESV EGHPDK+ DQ+SDAVLD  LAQDP+S+VACET   T M  + GEITT+   D   +VR+T R+IG+ S+++G D   C V+ +I++QS DIAQGV
Sbjct:    8 YYFTSESVTEGHPDKVADQISDAVLDVLLAQDPNSRVACETLVTTGMAVIAGEITTRGYADLPHVVRETIRNIGYNSSEMGFDWQTCAVISSIDKQSADIAQGV 111          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BAUCH (S-adenosylmethionine synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M   LFTSESV+EGHPDK+ DQ+SD VLDA LAQD  ++VACET  KT MV V GEITT A +D E++ R+T R IG+T++++  DA+ C VL  I +QSPDI +G++
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDTVLDAILAQDLKARVACETYVKTGMVLVGGEITTNAWIDIEELTRNTIRDIGYTNSEMKFDANSCAVLSIISKQSPDINKGIN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            +F+FTSESV+EGHPDK+ DQVSDAVLDA LAQDP ++VA ET  KT MV + GE+TT A VD E++VR     IG+ + ++G D   C VL  I +QSPDIA GV
Sbjct:    4 SFIFTSESVSEGHPDKIADQVSDAVLDAILAQDPKARVAVETLVKTGMVVLAGEVTTSAWVDTEELVRKVVHEIGYDNPEIGFDWQSCAVLTAIGKQSPDIAMGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_MARMS (S-adenosylmethionine synthetase OS=Marinomonas sp. (strain MWYL1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            E  LFTSESV+EGHPDK+ DQVSDA+LDA LA+DP+++VACET  KT MV V GE+ T A VD E+I R   R IG+ S+D+G D + C V+  I +QS DIA GV
Sbjct:    3 EYSLFTSESVSEGHPDKIADQVSDAILDAILAEDPEARVACETLVKTGMVLVAGEVRTNAWVDIEEIARGVIREIGYNSSDMGFDWESCAVMNAIGKQSADIAVGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CHLSY (S-adenosylmethionine synthetase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEIT-TKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            F FTSESV+EGHPDK+CDQ+SDA+LDA L+ DP ++VA ET T T ++ V GE+T  +  +  E+IVR T + IG+TSA+ G DAD C V+V I  QSPDIA GV
Sbjct:   11 FYFTSESVSEGHPDKMCDQISDAILDAFLSHDPKARVAVETATTTGLIVVLGEVTYERGYIPIEEIVRRTVKEIGYTSAEYGFDADTCGVMVAIHGQSPDIAMGV 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CHLAA (S-adenosylmethionine synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEIT-TKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            F FTSESV+EGHPDK+CDQ+SDA+LDA L+ DP ++VA ET T T ++ V GE+T  +  +  E+IVR T + IG+TSA+ G DAD C V+V I  QSPDIA GV
Sbjct:   11 FYFTSESVSEGHPDKMCDQISDAILDAFLSHDPKARVAVETATTTGLIVVLGEVTYERGYIPIEEIVRRTVKEIGYTSAEYGFDADTCGVMVAIHGQSPDIAMGV 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP  +VA ET   T ++ + GEITT A VDY  + R T R IG+ S+D+G D   C V+  +++QSPDIAQGV
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.484e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP  +VA ET   T ++ + GEITT A VDY  + R T R IG+ S+D+G D   C V+  +++QSPDIAQGV
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_THEEB (S-adenosylmethionine synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            +LF+SESV EGHPDK+CDQ++DA+LDA L QDP S+VA E    T +V + GEITTKA V+Y  + R     IG+T A+ G  A+ C VLV +++QSPDIA+GV
Sbjct:    3 YLFSSESVTEGHPDKICDQIADAILDALLTQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYVNLARQKIHEIGYTDANNGFAANSCAVLVALDEQSPDIARGV 106          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DESVV1.136e-2856.73S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_DESVH1.136e-2856.73S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_BAUCH1.136e-2857.41S-adenosylmethionine synthetase OS=Baumannia cicad... [more]
METK_METCA1.484e-2859.05S-adenosylmethionine synthetase OS=Methylococcus c... [more]
METK_MARMS1.484e-2859.43S-adenosylmethionine synthetase OS=Marinomonas sp.... [more]
METK_CHLSY1.484e-2858.10S-adenosylmethionine synthetase OS=Chloroflexus au... [more]
METK_CHLAA1.484e-2858.10S-adenosylmethionine synthetase OS=Chloroflexus au... [more]
METK_ACIF51.484e-2856.60S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_ACIF21.484e-2856.60S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_THEEB1.938e-2855.77S-adenosylmethionine synthetase OS=Thermosynechoco... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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