FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BUCAT (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  L QD  ++VACET  KT MV + GEITT A VD E+I R T   IG+ ++D G DA+ C VL  I +QSPDI QG++
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGIN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  + QD  ++VACET  KT MV + GEITT A VD E+I R+T  +IG+ +++ G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEIIKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRNTINNIGYINSETGFDANSCAVLSTIGKQSPDITQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  L QD  ++VACET  KT MV + GEITT A VD E+I R T   IG+ ++D G DA+ C VL  I +QSPDI QG++
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGIN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  L QD  ++VACET  KT MV + GEITT A VD E+I R T   IG+ ++D G DA+ C VL  I +QSPDI QG++
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGIN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BIFA0 (S-adenosylmethionine synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metK PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            E  L ++ESV EGHPDK+CDQ+SDA+LD  L QDP S VA ET        VFGE+T+K   D + IVRDT R IG+TS+ +GLDAD C VLV++ +QSP+I QGV
Sbjct:    3 EVKLISAESVTEGHPDKICDQISDAILDDMLRQDPHSHVAVETSATKGQFWVFGEVTSKGYSDIQSIVRDTVRRIGYTSSVIGLDADSCGVLVSLSEQSPEINQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_RHOFD (S-adenosylmethionine synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET   T +V + GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFKQDPKSRVAAETLCNTGLVVLAGEITTNAHVDYIQVARDTLKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            LFTSESV EGHPDK+ DQ+SDAVLDA   +DP ++VACET   T +V V GEITT   VD  ++ R+T R IG+T A  G D D C V+ +I++QS DIAQGV   L  R
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAIFEKDPLARVACETLVTTGLVLVAGEITTDCYVDIPRVARETIREIGYTRAKYGFDCDTCAVITSIDEQSSDIAQGVDRALEVR 114          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA +A+D  ++VACET  KT +  V GEITT A VD E +VR     IG+TS+DVG D + C VL  I +QS DIAQGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIARDKQARVACETMVKTGVAIVAGEITTSAWVDLEDLVRRVINDIGYTSSDVGFDGNTCGVLNLIGKQSVDIAQGVD---RSKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRSY (S-adenosylmethionine synthetase OS=Streptococcus suis (strain 05ZYH33) GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 521
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T  + G  A+   V  ++ +QSPDIAQGV+  L  R +
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSPDIAQGVNEALETRQD 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRS2 (S-adenosylmethionine synthetase OS=Streptococcus suis (strain 98HAH33) GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 521
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T  + G  A+   V  ++ +QSPDIAQGV+  L  R +
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSPDIAQGVNEALETRQD 117          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BUCAT1.938e-2857.41S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAP1.938e-2857.01S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAI1.938e-2857.41S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA51.938e-2857.41S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BIFA01.938e-2857.55S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_RHOFD2.531e-2857.69S-adenosylmethionine synthetase OS=Rhodoferax ferr... [more]
METK_PELTS2.531e-2856.36S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_CHRSD2.531e-2856.78S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_STRSY3.305e-2854.78S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRS23.305e-2854.78S-adenosylmethionine synthetase OS=Streptococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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