FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LEIXX (S-adenosylmethionine synthetase OS=Leifsonia xyli subsp. xyli GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 521
            LFTSESV EGHPDK+CDQ+SD++LDA LA D  S+VA ET   T +V V GE+TTK  V+   +VRDT   IG+ S+DV  D   C V V+I  QSPDIAQGV   L  R E
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLAVDEHSRVAVETLVTTGLVHVAGEVTTKGYVEIPALVRDTIVEIGYDSSDVSFDGTQCGVSVSIGAQSPDIAQGVDNALETRSE 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M    FTSESV+EGHPDK+ DQ+SDAVLDA +A+D  ++VACET  KT +  + GE++T A VD EK+ R+    IG+TS+DVG D   C ++  I QQSP+IAQGV       PEE G
Sbjct:    1 MSRHFFTSESVSEGHPDKIADQISDAVLDAIIAKDKHARVACETMVKTGVAIISGEVSTNAWVDLEKLTRNVISDIGYTSSDVGFDGATCGIMNLIGQQSPEIAQGVD---RSNPEEQG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L +D  ++VA ET   T +V + GEITT ANVDY KI R+T + IG+  +++G D   C V+   ++QSPDIAQGV+
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDAILDAILREDKHARVAAETLVNTGLVVLAGEITTTANVDYIKIARETIKRIGYDDSELGFDFRGCAVMACYDKQSPDIAQGVN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            +LFTSESV+EGHPDK+ DQVSD VLDA LA DP ++VACET   T +V + GEITT A+ +Y +I ++  R IG+ ++D+G D   C VL  I +QS DIAQGV+
Sbjct:    5 YLFTSESVSEGHPDKVADQVSDGVLDAILATDPQARVACETLVSTGLVVISGEITTTAHPNYREIAQEVIRRIGYDNSDIGFDYKSCAVLAAINRQSADIAQGVN 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPZ (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPG (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPF (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPD (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPC (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRPB (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LEIXX3.305e-2857.14S-adenosylmethionine synthetase OS=Leifsonia xyli ... [more]
METK_COLP33.305e-2852.94S-adenosylmethionine synthetase OS=Colwellia psych... [more]
METK_CHRVO3.305e-2854.63S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_AZOSE3.305e-2856.19S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_STRPZ4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRPG4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRPF4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRPD4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRPC4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRPB4.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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