FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRP8 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M18 GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRP6 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M6 GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRP3 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M3 GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PSEPF (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA +AQD  ++VA ET  KT +  V GE+TT A VD E+IVRD    IG+TS+DVG D   C V+  I +QSPDI QGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIAQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICDIGYTSSDVGFDGATCGVMNIIGKQSPDINQGVD---RAKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PSEF5 (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA +AQD  ++VA ET  KT +  V GE+TT A VD E+IVRD    IG+TS+DVG D   C V+  I +QSPDI QGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIAQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICDIGYTSSDVGFDGATCGVMNIIGKQSPDINQGVD---RAKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DESRM (S-adenosylmethionine synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            M   LFTSESV EGHPDK+ DQ+SDA+LD+ LA+DP ++VACET   T +V V GEI+ +  VD  K+VR+T   IG+T A  G D D C VL  I++QSPDIA GV   L  +  E
Sbjct:    1 MSRKLFTSESVTEGHPDKVADQISDAILDSILAKDPMARVACETFVTTGLVLVGGEISCQCYVDIPKVVRETILEIGYTRAKYGFDGDTCAVLTAIDEQSPDIAMGVDKALEAKTGE 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BLOFL (S-adenosylmethionine synthetase OS=Blochmannia floridanus GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  FLFTSESV+ GHPDK+ DQ+SD++LD+ L QDP ++VACET  KT +V + GEITT A+V+ EKI R+T + IG+T   +GLDA+ C +L  I QQSP+I   ++
Sbjct:    1 MTRFLFTSESVSAGHPDKIADQISDSILDSILEQDPKARVACETYIKTGIVLIGGEITTTASVNIEKIARNTIQEIGYTHPKMGLDANSCVILSVINQQSPEIQYSIN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BIFAA (S-adenosylmethionine synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metK PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            E  L ++ESV EGHPDK+CDQ+SDA+LD  LAQDP S VA ETC       VFGE+T++   D + IVR   R+IG+TS+ VGLDAD C V V++ +QSP+I QGV
Sbjct:    3 ELKLISAESVTEGHPDKVCDQISDAILDDMLAQDPHSHVAVETCATVGQFFVFGEVTSEGYSDIQNIVRSVVRNIGYTSSRVGLDADSCGVTVSLTEQSPEINQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRSV (S-adenosylmethionine synthetase OS=Streptococcus sanguinis (strain SK36) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA L+QDPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A+   V  ++ +QSPDIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRGC (S-adenosylmethionine synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA L+QDPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A+   V  ++ +QSPDIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVR 115          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRP84.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRP64.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRP34.317e-2854.87S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_PSEPF4.317e-2856.78S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PSEF54.317e-2856.78S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_DESRM4.317e-2853.85S-adenosylmethionine synthetase OS=Desulfotomaculu... [more]
METK_BLOFL4.317e-2854.63S-adenosylmethionine synthetase OS=Blochmannia flo... [more]
METK_BIFAA4.317e-2856.60S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_STRSV5.638e-2855.75S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRGC5.638e-2855.75S-adenosylmethionine synthetase OS=Streptococcus g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
back to top