FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STACT (S-adenosylmethionine synthetase OS=Staphylococcus carnosus (strain TM300) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 521
            LFTSESV EGHPDK+ DQ+SDA+LD  L +DPD++VACET   T M  + GEI+T   VD+ K+VRDT   IG+T A  G D+    V+  I++QSPDIAQ V   L  R E
Sbjct:    7 LFTSESVTEGHPDKIADQISDAILDELLKKDPDARVACETVVTTGMAMIVGEISTATYVDFPKVVRDTVEEIGYTRAKYGYDSQTMAVMSAIDEQSPDIAQAVDRALEYRNE 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAW (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MW2) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAU (S-adenosylmethionine synthetase OS=Staphylococcus aureus GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAT (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAS (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MSSA476) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAR (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MRSA252) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAN (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain N315) GN=metK PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAM (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=metK PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAE (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Newman) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAC (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain COL) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STACT5.638e-2854.46S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAW5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAU5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAT5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAS5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAR5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAN5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAM5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAE5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAC5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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