FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAAB (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=metK PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAA9 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain JH9) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAA8 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAA3 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAA2 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain JH1) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAA1 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            LFTSESV EGHPDK+ DQVSDA+LDA L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D +   +L  I++QSPDIAQGV   L  R ++
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDKALEYRDKD 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_PSEMY (S-adenosylmethionine synthetase OS=Pseudomonas mendocina (strain ymp) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 65/118 (55.08%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA + QD  ++VA ET  KT +  V GE+TT A VD E+IVRD   +IG+TS+DVG D + C ++  I +QSPDI QGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIVQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICNIGYTSSDVGFDGNTCGIINIIGKQSPDINQGVD---RAKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_MARAV (S-adenosylmethionine synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 65/115 (56.52%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            +FTSESV+EGHPDKL DQ+SDAVLDA L  DP ++VACET  KT +  V GEITT A VD E +VR   + I +TS++VG D D C V+  I +QS DIAQGV     ++PE+ G
Sbjct:    6 IFTSESVSEGHPDKLADQISDAVLDAILTDDPHARVACETMVKTGVAIVGGEITTSAWVDLEDLVRGVIKDIDYTSSEVGYDGDTCGVINIIGKQSVDIAQGVD---RQKPEDQG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_MANSM (S-adenosylmethionine synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            M ++LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E I R     IG+TS+++G D   C VL  I +QS DI QGV
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIEYIARQVICDIGYTSSEMGFDGHSCAVLNGIGKQSSDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_HAEPS (S-adenosylmethionine synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E + R     IG+T +D+G DA  C VL  I +QSPDI QGV
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGV 107          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STAAB5.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA95.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA85.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA35.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA25.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAA15.638e-2853.98S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_PSEMY5.638e-2855.08S-adenosylmethionine synthetase OS=Pseudomonas men... [more]
METK_MARAV5.638e-2856.52S-adenosylmethionine synthetase OS=Marinobacter aq... [more]
METK_MANSM5.638e-2858.88S-adenosylmethionine synthetase OS=Mannheimia succ... [more]
METK_HAEPS5.638e-2861.17S-adenosylmethionine synthetase OS=Haemophilus par... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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