FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACTPJ (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E + R     IG+T +D+G DA  C VL  I +QSPDI QGV
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACTP7 (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E + R     IG+T +D+G DA  C VL  I +QSPDI QGV
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ACTP2 (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E + R     IG+T +D+G DA  C VL  I +QSPDI QGV
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPDINQGV 107          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STAS1 (S-adenosylmethionine synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.363e-28
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 521
            LFTSESV EGHPDK+ DQVSDA+LD  L  DP+++VACET   T M  + GEI+T   VD  K+VR+T + IG+T A  G D+    VL  I++QSPDIAQGV   L  R E
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKEIGYTRAKFGYDSQTMAVLTAIDEQSPDIAQGVDTALEYRDE 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DEHE1 (S-adenosylmethionine synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.363e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            +LFTSESV EGHPDK+CDQ+SDAVLDA +A+DP++ VACET     +V V GEITT   V+  ++VR   + IG+T  + G D   C VL +I +QSPDIA GV+
Sbjct:   11 YLFTSESVTEGHPDKICDQISDAVLDAIIAKDPNAHVACETAVTNGLVVVMGEITTSCYVEIPELVRGVIKDIGYTKPEYGFDDRTCGVLTSINRQSPDIALGVN 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CYAP7 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7424) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.363e-28
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            +LFTSESV EGHPDK+CDQ+SD +LDA L+QDP S+VA E    T +V + GEIT+KA V+Y  + R     IG+T ++ G  A+ C VLV +++QSPDI+QGV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLSQDPYSRVAAEVVVNTGLVLITGEITSKAQVNYVDLARQKIAEIGYTDSNNGFSANSCAVLVALDEQSPDISQGV 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_WIGBR (S-adenosylmethionine synthetase OS=Wigglesworthia glossinidia brevipalpis GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            M  +LFTSESV+EGHPDK+ DQ+SD +LDA L QD  ++VACET  KT MV V GE+ + A +D E+++R+T + IG+ ++++G DA+ C +L NI +QS DI +G++
Sbjct:    1 MNQYLFTSESVSEGHPDKIADQISDTILDAILTQDKKARVACETYIKTGMVLVGGEVNSYAKIDIEELIRNTIKDIGYINSNMGFDANSCAILNNISKQSKDIEKGLN 108          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_THEM4 (S-adenosylmethionine synthetase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 527
            LFTSESV EGHPDK+ DQ+SDA+LDA L QDP S+VA ET   T +  V GE+TT+A VD + IVR T   IG+T A  G D + C VL +I  QSPDIA GV   L  +  E+
Sbjct:    4 LFTSESVTEGHPDKVADQISDAILDAMLEQDPRSRVAVETLVTTGIAIVSGEVTTRAYVDIQDIVRKTIMEIGYTRAKYGFDGETCAVLSSIHSQSPDIAMGVDKALEAKEGEL 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SYNY3 (S-adenosylmethionine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=metK PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 55/104 (52.88%), Postives = 79/104 (75.96%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            +LFTSESV EGHPDK+CDQ+SD +LDA L  DP+S+VA ET   T +  V GEIT++A++++ +++R     IG+T+AD G  A+ C V++ I++QSPDI+QGV
Sbjct:   11 YLFTSESVTEGHPDKVCDQISDTILDALLTLDPNSRVAAETVVNTGLTLVTGEITSQAHINFVELIRQKIAEIGYTNADNGYSANSCAVMLAIDEQSPDISQGV 114          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 524
            +F+SESV EGHPDK+CDQ+SDA++DA L  DP S+VA E    T MV + GEIT++A+V++ ++VRD    IG+T A  G  A+ C VLV  ++QSPDIAQGV+  L  R  +
Sbjct:    1 MFSSESVTEGHPDKICDQISDAIVDALLTADPLSRVAAEVVVNTGMVILTGEITSQAHVNFTRLVRDKVAEIGYTDAKNGFSAESCAVLVAFDEQSPDIAQGVNLALESRTSQ 113          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACTPJ5.638e-2861.17S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_ACTP75.638e-2861.17S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_ACTP25.638e-2861.17S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_STAS17.363e-2855.36S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_DEHE17.363e-2855.24S-adenosylmethionine synthetase OS=Dehalococcoides... [more]
METK_CYAP77.363e-2854.81S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_WIGBR9.617e-2850.93S-adenosylmethionine synthetase OS=Wigglesworthia ... [more]
METK_THEM49.617e-2855.26S-adenosylmethionine synthetase OS=Thermosipho mel... [more]
METK_SYNY39.617e-2852.88S-adenosylmethionine synthetase OS=Synechocystis s... [more]
METK_SYNJA9.617e-2852.21S-adenosylmethionine synthetase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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