FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875663_ssr17 microsatellite FC875663_ssr17:17..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15265 contig Ccv1_Contig15265:29..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_RICTY (S-adenosylmethionine synthetase OS=Rickettsia typhi GN=metK PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 62/119 (52.10%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            ME F+FTSESV+EGHPDK+ DQ+SDAVLD  L  DP+ +VACET   T +V V GEITT   VD E++VR+    IG+ +   G D   C V+ +I +QSPDIA G+        EEIG
Sbjct:    1 MENFVFTSESVSEGHPDKIADQISDAVLDEILKHDPNGRVACETFVTTGLVLVGGEITTNTYVDIEQVVRNKIHEIGYNNPSYGFDGSCCAVISSIVKQSPDIAMGID---NANEEEIG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            T LFTSESV+EGHPDK+ DQ+SDAVLDA ++QDP+ +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALISQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRT2 (S-adenosylmethionine synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=metK PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DPD+ VA ET   T  V VFGE++T A VD  ++VRDT   IG+ +A+ G  A+   V  ++ +QSPDIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEVSTTAYVDINRVVRDTIAEIGYNNAEYGFAAESVGVHPSLIEQSPDIAQGVNESLEVR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_STRP1 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M1 GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 497
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVN 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_RICPR (S-adenosylmethionine synthetase OS=Rickettsia prowazekii GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M+ F+FTSESV+EGHPDK+ DQ+SDAVLD  L  DP+ +VACET   T +V V GEITT   VD E++VR+  + IG+ + + G D   C V+ +I +QSPDIA G+     +  EEIG
Sbjct:    1 MKNFVFTSESVSEGHPDKIADQISDAVLDEILKHDPNGRVACETFVTTGLVLVGGEITTNTYVDIEQVVRNKIQEIGYNNPNYGFDGSCCAVISSIIKQSPDIAMGID---NENEEEIG 116          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  186 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M  V GEITT A VD E + R     IG++ +D+G DA  C VL  I +QSPDI QGV
Sbjct:   10 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVIYDIGYSHSDMGFDAHSCAVLNAIGKQSPDINQGV 112          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COXBU (S-adenosylmethionine synthetase OS=Coxiella burnetii GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            T LFTSESV+EGHPDK+ DQ+SDAVLDA + QDP+ +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COXBR (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            T LFTSESV+EGHPDK+ DQ+SDAVLDA + QDP+ +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COXB2 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuG_Q212) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            T LFTSESV+EGHPDK+ DQ+SDAVLDA + QDP+ +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELG 117          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_COXB1 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuK_Q154) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            T LFTSESV+EGHPDK+ DQ+SDAVLDA + QDP+ +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+G
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALIGQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGEACAVVTAIGKQSPDIVMGVDG---REDQELG 117          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RICTY9.617e-2852.10S-adenosylmethionine synthetase OS=Rickettsia typh... [more]
METK_COXBN9.617e-2852.99S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_STRT21.256e-2754.87S-adenosylmethionine synthetase OS=Streptococcus t... [more]
METK_STRP11.256e-2756.07S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_RICPR1.256e-2751.26S-adenosylmethionine synthetase OS=Rickettsia prow... [more]
METK_HAEDU1.256e-2760.19S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_COXBU1.256e-2752.99S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXBR1.256e-2752.99S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB21.256e-2752.99S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB11.256e-2752.99S-adenosylmethionine synthetase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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