FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.772e-59
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QD DSKVACETCTKTNMV VFGEITTKA VDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDQDSKVACETCTKTNMVMVFGEITTKAAVDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.772e-59
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMV VFGEITTKA++DYE+IVR TCR IGF S DVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLIQDPDSKVACETCTKTNMVMVFGEITTKADIDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.772e-59
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M+TFLFTSESVNEGHPDKLCDQVSDA+LDACL QDP+SKVACETCTKTNMV VFGEITTKA V+YEKIVRDTCR IGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.621e-59
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            ++TFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETC+KTNMV +FGEITTKANVDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 VDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCSKTNMVMIFGEITTKANVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.729e-59
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            ME+FLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMV VFGEITTKANVDYEKIVR+TCR IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCREIGFISDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.729e-59
Identity = 108/119 (90.76%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMV VFGEITTK  +DYEKIVRDTCR+IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGKIDYEKIVRDTCRNIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.176e-59
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            ME+FLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMV VFGEITTKANVDYE+IVR TCR IGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+PEE+G
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.176e-59
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M+TFLFTSESVNEGHPDKLCDQVSDA+LDACL QDP+SKVACETC+KTNMV VFGEITTKA VDYEKIVRDTCR IGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGHL+K+PEEIG
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCSKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLSKKPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.066e-59
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACETCTKTN+V VFGEITTKANVDYEKIVRDTCR+IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRNIGFISDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKQPEEIG 119
[Close]
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 8.066e-59
Identity = 109/119 (91.60%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMV VFGEITTKA VDYEKIVRDTCR+IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TK PEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIG 119
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CAMSI2.772e-5992.44S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK2_PICSI2.772e-5990.76S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK1_VITVI2.772e-5990.76S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK_DENCR3.621e-5989.08S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK2_BRAJU4.729e-5989.92S-adenosylmethionine synthetase 2 OS=Brassica junc... [more]
METK1_POPTR4.729e-5990.76S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK4_ARATH6.176e-5989.08S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK3_VITVI6.176e-5989.92S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_PETHY8.066e-5990.76S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK1_ARATH8.066e-5991.60S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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