FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875663_ssr17 microsatellite FC875663_ssr17:17..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15265 contig Ccv1_Contig15265:29..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.987e-57
Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMV VFGEITT A VDYEKIVR TCR IGF SADVGLDAD C VLVNIEQQSPDIAQGVHGHLTK+PE+IG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIG 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.987e-57
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M+TFL+TSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMV VFGEITTKANVDYEKIV  TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    1 MDTFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVHKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIG 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.595e-57
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            M+TFL TSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMV VFGEITTKANVDYEKIVR TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    1 MDTFLNTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIG 119          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.426e-57
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            +TFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQD +SKVACETCTKTN+V VFGEITTKANVDYEKIV DTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    6 DTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDAESKVACETCTKTNLVMVFGEITTKANVDYEKIVADTCREIGFVSPDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEDIG 123          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.780e-57
Identity = 107/118 (90.68%), Postives = 109/118 (92.37%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQD DSKVACET TKTNMV V GEITTKA VDYEKIVRDTCR+IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEE+G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDADSKVACETVTKTNMVMVLGEITTKATVDYEKIVRDTCRNIGFISDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEVG 121          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.352e-50
Identity = 96/119 (80.67%), Postives = 103/119 (86.55%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            +E+FL+TSESVNEGHPDK+CDQVSDAVLDACL QDPDSKVACETC KT MV VFGEITTKA VDYE IVR  C+ IGFTS DVGLDAD CKVLV+IE+QSPDI QGVHG  TK  EEIG
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDADKCKVLVHIEEQSPDIGQGVHGMGTKALEEIG 122          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.076e-45
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            FLFTSESVNEGHPDKL DQ+SD +LDACLAQDPDSKVACET TKTNMV VFGEITTKA VDYE +VR  CR +GF S + GLD + C+VLV +  QSPDI QGVHG  TK  E+IG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLDGNKCRVLVELHDQSPDIGQGVHGMGTKSDEDIG 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.658e-45
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            FLFTSESVNEGHPDKL DQ+SD +LDACL QDPDSKVACET TKTNMV VFGEITTKA VDYE +VR  CR +GF S + GLD ++C+VLV +  QSPDI QGVHG  TK  EEIG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLDGNNCRVLVELHDQSPDIGQGVHGMGTKSLEEIG 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.805e-42
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 3
Query:  255 LDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            +DACL QD DSKVACETCTKTN+V VFGEITTKANVDYEKIVR+TCR+IGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PEEIG
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKKPEEIG 94          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.405e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  273 QDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            QDPDSKVACETCTKTNMV VFGEITTK N+DYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 86          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ARATH1.987e-5788.24S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_DAUCA1.987e-5788.24S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_DAUCA2.595e-5789.08S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK2_DIACA4.426e-5788.98S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK3_HORVU5.780e-5790.68S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_CHLRE2.352e-5080.67S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU5.076e-4573.28S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK_OSTTA8.658e-4573.28S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK1_PEA1.805e-4288.04S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK3_ACTCH3.405e-4191.86S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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