FC875663

Overview
NameFC875663
Unique NameFC875663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.933e-36
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+ + GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.525e-36
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+ + GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.625e-36
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            TFLFTSESV EGHPDK+CDQ++DAVLDA L QDPD+KVACET  KT M+ + GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQINDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_LACBA (S-adenosylmethionine synthetase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=metK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.253e-35
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  177 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 515
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDPDS+VACET   T +V VFGEI+TKA VD +K+VR T + IG+T    G D D+C VLV I++QSPDIAQGV   L  R
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDALLAQDPDSRVACETSVTTGLVLVFGEISTKAYVDIQKVVRQTIKEIGYTDGQYGFDGDNCAVLVAIDEQSPDIAQGVDDSLETR 115          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_BRAHW (S-adenosylmethionine synthetase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=metK PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ + F+SESV EGHPDK+CD VSDAVLD CL QDP+S+VACET  KT M+ + GEITTKA +DY+KI RDT R IG+TS+D+G DAD C V+ +I +QSPDI  GV
Sbjct:    4 IKNYYFSSESVTEGHPDKICDAVSDAVLDECLKQDPNSRVACETLAKTGMIMIAGEITTKAKLDYQKIARDTVRRIGYTSSDMGFDADTCAVMESIAEQSPDIDMGV 110          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.219e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  V + GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ANADE (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.219e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  V + GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.219e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  174 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 494
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  V + GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.219e-35
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  183 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            FLFTSESV+EGHPDK+CDQ+SDAVLDA L QDP++KVACET TKT MV + GEIT+KA VDY+ +VR     IGFT + +G D   C VLV +EQQSP+IA GV  H+ K  E++G
Sbjct:    5 FLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGV--HVNKDGEDVG 118          
BLAST of FC875663 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.385e-34
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  180 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVTVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 530
            TFLFTSESV EGHPDK+CDQ+SDA+LDA L QDP++KVACET  KT M+ + GEIT+KA VDY+K+VR+T + IG+  +  G D   C VL+ ++QQSP+IA GV  H+ +  EEIG
Sbjct:   28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGV--HVNRAEEEIG 142          
The following BLAST results are available for this feature:
BLAST of FC875663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_HUMAN1.933e-3663.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE2.525e-3662.39S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_RAT5.625e-3661.54S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_LACBA1.253e-3563.72S-adenosylmethionine synthetase OS=Lactobacillus b... [more]
METK_BRAHW2.137e-3563.55S-adenosylmethionine synthetase OS=Brachyspira hyo... [more]
METK_ANASK6.219e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANADE6.219e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANAD26.219e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK1_CAEEL6.219e-3562.93Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_DROME1.385e-3459.83S-adenosylmethionine synthetase OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC31401D12EF CTVClemen1 Citrus clementina cDNA clone C31401D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875663 ID=FC875663; Name=FC875663; organism=Citrus clementina; type=EST; length=532bp
GCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCT
TTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAA
TTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTT
CAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAA
TCAGTGAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGC
AGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTG
AAACATGCACAAAGACCAACATGGTCACGGTTTTTGGAGAAATTACAACC
AAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGAT
TGGGTTCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTC
TTGTTAATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGG
CATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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