FC875664

Overview
NameFC875664
Unique NameFC875664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:526..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 50/175 (28.57%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   13 AEILEQYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQ-DYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            + I E  LP   D+ + ++  F + G++   LV L G H++G  HC  L +RLY      + DP+L+ ++   +  KC            +  D G+    D +Y+  +   +GL   D  L  + +TR YV +  ++    FF +F  ++  +     LTG  GEIRK C  AN
Sbjct:  151 SNINEVNLPSPFDNITKLISDFRSKGLNEKDLVILSGGHTIGMGHCPLLTNRLYNFTGKGDSDPSLDSEYAAKLRKKCKPT----DTTTALEMDPGSFKTFDLSYFTLVAKRRGLFQSDAALLDNSKTRAYVLQQIRTHGSMFFNDFGVSMVKMGRTGVLTGKAGEIRKTCRSAN 321          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 51/171 (29.82%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDY----FFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP   DS  +   +F   G++   LVAL G+H++G   C  +  RL+        DP+++   +P +   CP    +  A + V  D G+    D +Y+ N+ + +G++  D +L TD  T+ +V++    +      F  EF R++  +S     TGT GEIRKVC+  N
Sbjct:  163 LPAFFDSVDIQKRKFLTKGLNTQDLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQ---NGDASRRVGLDTGSVNNFDTSYFSNLRNGRGVLESDQKLWTDASTQVFVQRFLGIRGLLGLTFGVEFGRSMVKMSNIEVKTGTNGEIRKVCSAIN 330          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 48/158 (30.38%), Postives = 73/158 (46.20%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVC 507
            LP    S   +L  ++   +DA  +VAL G+H++G+  C      +Y + +  +N      +   CP +     A      D  TP V  N+YY+N+L  KGL+  D +L  +  T   V   A S   F   F+ A+  +    PLTGT G+IR  C
Sbjct:  164 LPPPTSSLQALLAAYSKKNLDATDMVALSGAHTIGQAQCSSFNGHIYNDTN--INAAFATSLKANCPMSGGSSLAPL----DTMTPTVFGNDYYKNLLSQKGLLHSDQELFNNGSTDSTVSNFASSSAAFTSAFTAAMVKMGNLGPLTGTSGQIRLTC 315          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER2_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVC 507
            LP  N   S ++  FA  G++   +VAL GSH++G+  C++   R+Y      + P+    +   CP   P          D  TP   DNNYYRN++ S+GL++ D  L     T   V +   +   F  +F+ A+  +SE   +TGT G +R +C
Sbjct:  164 LPRGNMVLSQLISNFANKGLNTREMVALSGSHTLGQARCIRFRGRIYNST-LRIEPNFNRSLSQACP---PTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTDSIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER1_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVC 507
            LP  N   S ++  FA  G++   +VAL GSH++G+  C++   R+Y      + P+    +   CP   P          D  TP   DNNYYRN++ S+GL++ D  L     T   V +   +   F  +F+ A+  +SE   +TGT G +R +C
Sbjct:  164 LPRGNMVLSQLISNFANKGLNTREMVALSGSHTLGQARCIRFRGRIYNST-LRIEPNFNRSLSQACP---PTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTDSIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 50/169 (29.59%), Postives = 77/169 (45.56%), Query Frame = 1
Query:   13 AEILEQYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            A +    LP  + SRS +   F    ++   +VAL G+H++G+  C     R+Y   D  +N      +   CP +  +         D  TP   DN YY N+L  KGL+  D  L  ++ T   V+  A +   F   F+ A+  +    PLTGT+G+IR  C+  N
Sbjct:  147 ASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIYGG-DTNINTAFATSLKANCPQSGGNTNLANL---DTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNTVRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVN 311          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   70 ERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN-DRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFF---KEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            + FA  G++A  LV L G H++G + C  +  RLY      + DP++NP +V  +  KCP     P   +   N D G+ +  D +Y++ +   KGL   D  L  D  T+ YV+  A     F    K+FS ++  L     LTG  GEIRK C   N
Sbjct:  172 KNFANKGLNAKDLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCP-----PTDFRTSLNMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPVFSSFNKDFSDSMVKLGFVQILTGKNGEIRKRCAFPN 325          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/175 (28.00%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   28 QYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPALNPDHVPH-------MLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKM---AKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            Q++P  N S   ++  F   G++   L+AL G+H++G+  CV    R+  P ++     D           +  +C D+  D +       D  TP   DN+Y+ N+L+ +GL++ D+ L ++       +K+   A +QD FF +F  ++  +   N LTG +GEIR+ C   N
Sbjct:  164 QFIPAPNSSLDSLIINFKQQGLNIQDLIALSGAHTIGKARCVSFKQRIVQPNMEQTFYVDEFRRHSTFRRVLGSQCKDSSRDNELSPL---DIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHEGEIFQKVWEYAVNQDLFFIDFVESMLKMGNINVLTGIEGEIRENCRFVN 335          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 52/177 (29.38%), Postives = 84/177 (47.46%), Query Frame = 1
Query:    1 RKSRAEILEQYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTK-GEIRKVCNL 513
            ++S A+ +   +P  N +   +++ FA+ G+    LV L GSH++G  HC   + RLY        DP+L+   +  +   CP +      V  +  D  TP V DN Y+  +  + GL+  D  L  D RT+P   +MA+ +  F K F  A+  +       G + GEIR  C +
Sbjct:  170 KRSTAKNVPPNIPRSNSTVDQLIKLFASKGLTVEELVVLSGSHTIGFAHCKNFLGRLYDYKGTKRPDPSLDQRLLKELRMSCPFSGGSSGVVLPL--DATTPFVFDNGYFTGLGTNMGLLGSDQALFLDPRTKPIALEMARDKQKFLKAFGDAMDKMGSIGVKRGKRHGEIRTDCRV 344          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPD------HVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            +P   ++ +V++ +F   G+D   LVAL G+H+ GR  C     RL+   + + NPD       +  +   CP    +     +   D  TP   DN+Y+ N+  ++GL+  D +L   +   T   V + A SQ  FF +F  ++  L   +PLTGT G+IR  C   N
Sbjct:  158 IPSPFETLAVMIPQFTNKGMDLTDLVALSGAHTFGRARCGTFEQRLF-NFNGSGNPDLTVDATFLQTLQGICPQGGNNGNT--FTNLDISTPNDFDNDYFTNLQSNQGLLQTDQELFSTSGSATIAIVNRYAGSQTQFFDDFVSSMIKLGNISPLTGTNGQIRTDCKRVN 324          
The following BLAST results are available for this feature:
BLAST of FC875664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PER27_ARATH3.725e-1428.57Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PERN1_TOBAC4.865e-1429.82Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER42_MAIZE4.865e-1430.38Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER2_ZINEL6.354e-1431.01Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV... [more]
PER1_ZINEL6.354e-1431.01Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV... [more]
PER1_WHEAT6.354e-1429.59Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER1_ARATH6.354e-1433.33Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER20_ARATH8.298e-1428.00Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER19_ARATH8.298e-1429.38Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PERX_TOBAC2.414e-1330.00Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]

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Properties
Property NameValue
Genbank descriptionC31401E01EF CTVClemen1 Citrus clementina cDNA clone C31401E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875664 ID=FC875664; Name=FC875664; organism=Citrus clementina; type=EST; length=707bp
AGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCTCCCAGATCACAATGA
CAGCAGGTCTGTTGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCC
CTGGACTTGTTGCTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGT
GTGAAGCTGGTGCACCGTCTGTACCCAGAAGTTGACCCTGCACTGAACCC
TGACCACGTTCCGCATATGCTCCATAAGTGTCCTGATGCAATCCCAGACC
CCAAGGCTGTTCAGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTG
GACAACAACTACTATAGGAACATATTGGACAGCAAGGGCTTGATGATGGT
TGATCATCAGCTAGCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGA
TGGCCAAGAGTCAAGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACT
ATCCTTTCTGAGAACAACCCTCTCACCGGTACAAAGGGTGAGATCAGAAA
GGTTTGCAATCTTGCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACA
GCTGTATCTGCTGCAACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTT
CTTCTATGAGGAAGAAAAGAGTGTGAGATGAGCTCCCAATAGATGGTTTT
TCTAGATGGGTTTGTTTCCTGTAAGATGTTCGTGTTACTACTACTATGTC
CNTTAGA
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