FC875664

Overview
NameFC875664
Unique NameFC875664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:526..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCP-DAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFF---KEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP   DS +V   RFA   ++   LV L   H++G   C+    R +        DP + P  VP +  +CP +  P  + V     D G+    D +Y  N+ + +GL+  D  L T+  TRP V+++   +  F     EF+R++T +S+    TG  GEIR+VC+  N
Sbjct:  164 LPGPTDSVAVQKLRFAEKNLNTQDLVVLAAGHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVL----DTGSGDQFDTSYLNNLKNGRGLLESDQVLWTNLETRPIVERLLGLRFPFLIFGLEFARSMTKMSQIEIKTGLDGEIRRVCSAVN 330          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-----YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITIL 456
            LP    + S +++ FAA G+    +V L G H++G +HC     RL     + ++DP++N      +  KCP      K    V +   T  V DN YY+ IL  KG+   D  L  D RT+  V+  A+ Q  FF+EF+ ++  L
Sbjct:  160 LPPPTFNVSQLIQSFAARGLSVKDMVTLSGGHTIGFSHCSSFESRLQNFSKFHDIDPSMNYAFAQTLKKKCPRTSNRGKNAGTVLDS--TSSVFDNVYYKQILSGKGVFGSDQALLGDSRTKWIVETFAQDQKAFFREFAASMVKL 303          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP--EVDPALNPDH---VPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLAT-DKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP  N + S ++  F  +G+    +VAL G H++G+  C     RL P     PA + D+   +  +   C    P   +V   + D  TP   DN YY N+L  +GL+  D  LA  D  TR  V+  A  Q  FF++F  A  ++       G+  EIRK C + N
Sbjct:  186 LPSPNSTVSTLISTFQNLGLSQTDMVALSGGHTLGKARCTSFTARLQPLQTGQPANHGDNLEFLESLQQLCSTVGP---SVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPGTRAIVETYATDQSVFFEDFKNA--MVKMGGIPGGSNSEIRKNCRMIN 348          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP  + S + ++  F+  G+D   +VAL G+H++G+  C     RLY E +  ++      +   CP       +      D  TP   D+ YY N+L +KGL+  D  L     T   V+  + +   F   F+ A+  +   +PLTGT+G+IR  C+  N
Sbjct:  156 LPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQNFRDRLYNETN--IDSSFATALKANCPRPTGSGDS-NLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 47/167 (28.14%), Postives = 77/167 (46.11%), Query Frame = 1
Query:   19 ILEQYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            + E  LP   D  + ++  FA+ G+    +VAL G+H++G+  C     R+Y      ++         +CP    +         D  TP   DNNY++N++  KGL+  D  L     T   V + + S   F  +F+ A+  + + +PL+G  G IRKVC   N
Sbjct:  160 LAETDLPGPFDPLNRLISSFASKGLSTRDMVALSGAHTIGQAQCFLFRDRIYSN-GTDIDAGFASTRRRQCPQEGENGNLAPL---DLVTPNQFDNNYFKNLIQKKGLLQSDQVLFNGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPE-----VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDK--RTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            +P  N +   +L  F   G++   LV+L G H++G   C     RLY +      D  L   +   +   CP    D         D  +P   DN Y++ +L  KGL+  D  L T    +T   VK  A+ +  FF++F++++  +    PLTG  GEIRK C++ N
Sbjct:  181 IPAPNSTIQNLLTMFQRKGLNEEDLVSLSGGHTIGVARCTTFKQRLYNQNGNNQPDETLERSYYYGLRSICPPTGGDNNISPL---DLASPARFDNTYFKLLLWGKGLLTSDEVLLTGNVGKTGALVKAYAEDERLFFQQFAKSMVNMGNIQPLTGFNGEIRKSCHVIN 346          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 47/170 (27.65%), Postives = 76/170 (44.71%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPE--------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP    +   + + F A  +    +V L G+H+VGR+ C     R++          VD  L+P +   +   CP        +     D GTP VLDNNYY+ +    GL   D+QL  + +    V   A ++  + ++F+ A+  +      TGT GE+R  C + N
Sbjct:  171 LPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFCASFFKRVWNTSTNPATAIVDAGLSPSYAQLLRALCPSNTTQTTPITTAM-DPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNPQMAALVSSFASNETLWKEKFAAAMVKMGRIQVQTGTCGEVRLNCGVVN 339          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 49/178 (27.53%), Postives = 83/178 (46.63%), Query Frame = 1
Query:    1 RKSRAEILEQYLPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            R S A      LP    +   + + F+  G+    +V L G+H++GR+HC    +RLY        DP L+P +   +  +CP    +   V  V  +  +P + D  YY ++L ++GL   D  L TD  T   V++ A +   +  +F+ A+  + +   L G  G+IR  C + N
Sbjct:  186 RISLASEASTNLPPPTFTVDQLTQFFSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLV--VPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLTDTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVIN 361          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   34 LPDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            LP  + S + ++  F+  G+D   +VAL G+H++G+  C     RLY E +  ++      +   CP       +      D  TP   D+ YY N+L +KGL+  D  L     T   V+  + +   F   F+ A+  +   +PLTGT+G+IR  C+  N
Sbjct:  156 LPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQNFRDRLYNETN--IDSSFATALKANCPRPTGSGDS-NLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of FC875664 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 45/161 (27.95%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   37 PDHNDSRSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENNPLTGTKGEIRKVCNLAN 519
            P  +   + +  +FAA G+    L  L G H++G++ C     R+Y + +  ++ +        CP +      +  +  D  TP   DNNYY++++ ++GL+  D  L         V+  + +   FF +F+ AI  +S+ +PLTG  GEIRK C + N
Sbjct:    2 PGPSSDLTTLTTKFAAKGLTPSDLTVLSGGHTIGQSECQFFKTRIYNDTN--IDTNFATSRQANCPFSAGGETNLAPL--DSLTPNRFDNNYYKDLVSNRGLLHSDQVLFNGGSQDTLVRTYSTNNVKFFSDFAAAIVKMSKISPLTGIAGEIRKNCRVIN 158          
The following BLAST results are available for this feature:
BLAST of FC875664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PER70_ARATH2.414e-1330.99Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER66_ARATH3.153e-1332.19Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER40_ARATH3.153e-1331.55Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER2_ORYSJ3.153e-1329.01Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PERX_NICSY4.118e-1328.14Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER9_ARATH4.118e-1329.59Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PER1_MAIZE4.118e-1327.65Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER5_VITVI5.379e-1327.53Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER2_ORYSI5.379e-1329.01Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PERX_LUPPO7.025e-1327.95Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31401E01EF CTVClemen1 Citrus clementina cDNA clone C31401E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875664 ID=FC875664; Name=FC875664; organism=Citrus clementina; type=EST; length=707bp
AGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCTCCCAGATCACAATGA
CAGCAGGTCTGTTGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCC
CTGGACTTGTTGCTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGT
GTGAAGCTGGTGCACCGTCTGTACCCAGAAGTTGACCCTGCACTGAACCC
TGACCACGTTCCGCATATGCTCCATAAGTGTCCTGATGCAATCCCAGACC
CCAAGGCTGTTCAGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTG
GACAACAACTACTATAGGAACATATTGGACAGCAAGGGCTTGATGATGGT
TGATCATCAGCTAGCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGA
TGGCCAAGAGTCAAGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACT
ATCCTTTCTGAGAACAACCCTCTCACCGGTACAAAGGGTGAGATCAGAAA
GGTTTGCAATCTTGCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACA
GCTGTATCTGCTGCAACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTT
CTTCTATGAGGAAGAAAAGAGTGTGAGATGAGCTCCCAATAGATGGTTTT
TCTAGATGGGTTTGTTTCCTGTAAGATGTTCGTGTTACTACTACTATGTC
CNTTAGA
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