FC875670

Overview
NameFC875670
Unique NameFC875670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875670_ssr90 microsatellite FC875670_ssr90:90..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10291 contig Ccv1_Contig10291:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: INM2_YEAST (Inositol monophosphatase 2 OS=Saccharomyces cerevisiae GN=INM2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 3
Query:  432 VDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNP-IWMSFYWSRGQVHF 731
            VDLVT  DK  E +I  +L  ++P+ KFIGEET    G T++T+ PT+IVDP+DGTTNF+HG+P+ C S+GL     P+VGVV+NP +   F+ S+G   F
Sbjct:   45 VDLVTALDKQIESIIKENLTAKYPSFKFIGEETYVK-GVTKITNGPTFIVDPIDGTTNFIHGYPYSCTSLGLAEMGKPVVGVVFNPHLNQLFHASKGNGAF 144          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_SYNY3 (Inositol-1-monophosphatase OS=Synechocystis sp. (strain PCC 6803) GN=suhB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 52/122 (42.62%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  330 LVKFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQV-DLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEP-TWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNP 689
            L  +L+ A +A   AG  I + + + + ++ KG+  DLVTE D+  E +I   +K++ P H  + EE+    G     D P  W +DPLDGTTNF H +P  C+SIGL I  IP VGVVYNP
Sbjct:   14 LQTWLEIATEAVLAAGAEIFSLWGKVQQIQEKGRAGDLVTEADRQAEAIILEIIKRRCPDHAILAEES----GQLGQVDNPFCWAIDPLDGTTNFAHSYPVSCVSIGLLIQDIPTVGVVYNP 131          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_RHILO (Inositol-1-monophosphatase OS=Rhizobium loti GN=suhB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKN--VEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTD-EPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFY 707
            L+  V AA +AG  +   F + +N  V  KG  D V++ D+  ED+IF  L +  P + F+ EE     GA E  D +  WIVDPLDGTTNF+HG P   +SI L      + GV+YNP     Y
Sbjct:    7 LNVMVQAAMKAGRSLSRDFGEVQNLQVSLKGPGDYVSQADRKAEDIIFAELSKARPGYGFLMEER----GAVEGEDSQHRWIVDPLDGTTNFLHGIPLFAVSIALERQGQIVAGVIYNPAMDELY 127          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_PASMU (Inositol-1-monophosphatase OS=Pasteurella multocida GN=suhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVEH--KGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPT-WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            L+ A+ AA++AG +I  G+ +  +++   K   D VT  DKA E+ I   +++ +P H  I EE+    GA E  D    W++DPLDGTTNFV G P   +SI + +     VGVVY+PI
Sbjct:    5 LNIAIRAARKAGNVIAKGYERRDDLQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEES----GALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPI 120          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_ECOLI (Inositol-1-monophosphatase OS=Escherichia coli (strain K12) GN=suhB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVE--HKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPT-WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMS-FYWSRGQ 722
            L+ AV AA++AG +I   +     VE   KG  D VT  DKA E +I + +++ +P H  I EE+    G  E TD+   W++DPLDGTTNF+   P   +SI + I     V VVY+P+    F  +RGQ
Sbjct:    5 LNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEES----GELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTATRGQ 131          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_ECOL6 (Inositol-1-monophosphatase OS=Escherichia coli O6 GN=suhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVE--HKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPT-WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMS-FYWSRGQ 722
            L+ AV AA++AG +I   +     VE   KG  D VT  DKA E +I + +++ +P H  I EE+    G  E TD+   W++DPLDGTTNF+   P   +SI + I     V VVY+P+    F  +RGQ
Sbjct:    5 LNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEES----GELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTATRGQ 131          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_ECO57 (Inositol-1-monophosphatase OS=Escherichia coli O157:H7 GN=suhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVE--HKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPT-WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMS-FYWSRGQ 722
            L+ AV AA++AG +I   +     VE   KG  D VT  DKA E +I + +++ +P H  I EE+    G  E TD+   W++DPLDGTTNF+   P   +SI + I     V VVY+P+    F  +RGQ
Sbjct:    5 LNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEES----GELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTATRGQ 131          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: QAX_NEUCR (Protein QA-X OS=Neurospora crassa GN=qa-x PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  417 EHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELT-----DEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            E    VD+VT+TD+  E  I + +  ++P+H FIGEET A    +          PTW+VDPLDGT N+ H FP  C+SI   +   P++GV+  P+
Sbjct:   55 EKDSAVDIVTQTDEDVEAFIKSAINTRYPSHDFIGEETYAKSSQSTRPYLVTHTTPTWVVDPLDGTVNYTHLFPMFCVSIAFLVDGTPVIGVICAPM 151          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_HAEIN (Inositol-1-monophosphatase OS=Haemophilus influenzae GN=suhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVE--HKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPT-WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            L+ A+ AA++AG +I   + +   +E   KG  D VT  DKA E  I   +++ +P H  I EET    GA E  D    WI+DPLDGT NF+ G P   +SI + +     VGVVY+PI
Sbjct:    5 LNIAIRAARKAGNVIAKNYERRDAIESTQKGINDYVTNVDKASEAEIIEVIRKSYPDHTIITEET----GAIEGKDSDVQWIIDPLDGTRNFMTGLPHFSVSIAVRVKNRTEVGVVYDPI 120          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: SUHB_CAUCR (Inositol-1-monophosphatase OS=Caulobacter crescentus GN=suhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 51/133 (38.35%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  354 VDAAKRAGEIIRNGFYQTKN--VEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEP-TWIVDPLDGTTNFVHGFPFVCISIGL-TIGKIPIVGVVYNPIWMSFYW-SRGQVHFYG 737
            ++AA++A   +   F +     V  KG  D VT  D   E  +F  L +  P + F+GEE     G  E TD+  TWIVDPLDGTTNF+H  P   ++I L   G+  + GV YNPI    +W  +G+  F G
Sbjct:    2 IEAARKAARGLARDFGEVTELQVSKKGAADFVTNADIKAEQTLFELLTKARPGYGFLGEER----GMVEGTDKTHTWIVDPLDGTTNFMHAIPHFAVNIALQREGEGIVAGVTYNPITNDLFWVEKGKGAFLG 130          
The following BLAST results are available for this feature:
BLAST of FC875670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
INM2_YEAST1.366e-2050.50Inositol monophosphatase 2 OS=Saccharomyces cerevi... [more]
SUHB_SYNY35.740e-1942.62Inositol-1-monophosphatase OS=Synechocystis sp. (s... [more]
SUHB_RHILO2.041e-1640.80Inositol-1-monophosphatase OS=Rhizobium loti GN=su... [more]
SUHB_PASMU5.939e-1640.00Inositol-1-monophosphatase OS=Pasteurella multocid... [more]
SUHB_ECOLI1.728e-1539.69Inositol-1-monophosphatase OS=Escherichia coli (st... [more]
SUHB_ECOL61.728e-1539.69Inositol-1-monophosphatase OS=Escherichia coli O6 ... [more]
SUHB_ECO571.728e-1539.69Inositol-1-monophosphatase OS=Escherichia coli O15... [more]
QAX_NEUCR2.257e-1540.21Protein QA-X OS=Neurospora crassa GN=qa-x PE=3 SV=... [more]
SUHB_HAEIN2.948e-1540.83Inositol-1-monophosphatase OS=Haemophilus influenz... [more]
SUHB_CAUCR2.948e-1538.35Inositol-1-monophosphatase OS=Caulobacter crescent... [more]

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Properties
Property NameValue
Genbank descriptionC31401E07EF CTVClemen1 Citrus clementina cDNA clone C31401E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875670 ID=FC875670; Name=FC875670; organism=Citrus clementina; type=EST; length=764bp
GGTTGTAATTACCTCGATGGGACTCGAGAGAACTCTTCAGTATTCTTCCA
AAGGGTAATTGCGTGACGTGATGAATCTTGTCTATTAAAACACACACACA
AACACCAAGTAAAATCGTGGTGTCGGATTAGATTGGTTTGATGGTTTCAT
TTTGCTACGTATACAAAAAAAAAATCAAATAAAAAGAAAATAGCTCAAAA
ACGAAGCACAACCTGTCATTACCACCATCATCACTCATCAGCTCGCTGTC
CCTTCTCTTCTCGTTCTTCTCTTTAACTTTTTAATCCCGTATAATAAAAA
ATTCTACCCATATGGCACAAAATGATTCGCTTGTAAAGTTCTTGGACACT
GCAGTTGATGCAGCTAAGAGGGCTGGCGAGATAATCCGTAATGGGTTCTA
TCAAACCAAAAATGTGGAGCATAAAGGCCAGGTGGATTTGGTCACAGAAA
CTGATAAAGCATGTGAGGATCTCATATTTAATCATCTCAAGCAGCAATTT
CCCGCGCATAAGTTCATTGGAGAAGAAACTACCGCTGCTTGTGGTGCCAC
AGAGTTGACTGATGAACCCACTTGGATTGTTGATCCTCTTGATGGAACAA
CTAACTTTGTGCATGGGTTTCCCTTTGTGTGTATCTCTATCGGTCTTACA
ATTGGAAAGATTCCTATTGTCGGGGTTGTCTACAATCCAATATGGATGAG
CTTTTACTGGAGTCGTGGACAAGTGCATTTTTATGGAAAACTATAAAGTA
TATCTCAACTGACT
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