FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THEMA (S-adenosylmethionine synthetase OS=Thermotoga maritima GN=metK PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.987e-31
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEK 321
            GDQG MFGYAT+ETPE+MPL   LA +L  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + EHVI PVIPE+Y D+K
Sbjct:  128 GDQGIMFGYATNETPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDK 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.506e-31
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  126 GDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.506e-31
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  126 GDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.404e-30
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ +++  +L E VIK VIP   +D  T++H
Sbjct:  121 GDQGIMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACVPLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVYH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THENN (S-adenosylmethionine synthetase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=metK PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEK 321
            GDQG MFGYAT+ETPE+MPL   LA +L  +L EVRK G  P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + EHVI PVIPE+Y D+K
Sbjct:  128 GDQGIMFGYATNETPEYMPLPITLAHRLAMRLAEVRKKGILPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEEYRDDK 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THEAB (S-adenosylmethionine synthetase OS=Thermosipho africanus (strain TCF52B) GN=metK PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEK 321
            GDQG MFGYAT+ET E+MPL  +L+ +L  KL+EVRKNGT P+LRPDGKTQVT+E Y+EN    PVRV TVLISTQH+  VT  EI   L +HVI P+IPE+  D+K
Sbjct:  129 GDQGMMFGYATNETKEYMPLPIMLSHKLAMKLSEVRKNGTLPFLRPDGKTQVTIE-YDENDK--PVRVDTVLISTQHEPDVTISEIKEALIKHVIDPIIPEELRDDK 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.095e-29
Identity = 68/110 (61.82%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT ETPE MPL   LA +L  +L EVRK+   P+LRPDGKTQVTVEY  ENG   PVRV T++ISTQH   VT DEI + + EHV+KPV+P ++LD  T F
Sbjct:  129 GDQGMMFGYATTETPELMPLPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEY--ENGR--PVRVDTIVISTQHHPRVTLDEIRSGVLEHVVKPVVPPEFLDGSTRF 234          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFG+AT+ET E+MPL   +A +L  KL EVRKNGT  +LRPDGKTQVTVEY +      PVR+  V++STQHD  VT ++I  D+ EHVIK V+P ++LD++T ++
Sbjct:  126 GDQGIMFGFATNETKEYMPLPINMAHKLSRKLAEVRKNGTLAYLRPDGKTQVTVEYEDNK----PVRIDAVVVSTQHDPEVTQEQIQKDIMEHVIKTVVPNEWLDDETKYY 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYAT+ETPE MP+   LA +L  +L EVRK+   P+LRPDGKTQVTVEY  +     PVRV T+++STQH   V+ +EI  D+ EHV+KPVIPE  LDE T
Sbjct:  129 GDQGMMFGYATNETPELMPMPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEYDGDK----PVRVDTIVVSTQHHPDVSQEEIRKDIIEHVVKPVIPEHLLDENT 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.667e-29
Identity = 68/108 (62.96%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFG+A +ETPE MPL   LA +L  +LTEVRK G   +LRPDGKTQVTVEY         VRVHTVLIS QH ETV+ND+I  DL  HVIK VIP + LDE+T
Sbjct:  129 GDQGIMFGFACNETPELMPLPISLAHKLSRRLTEVRKTGLVDYLRPDGKTQVTVEYEGSKA----VRVHTVLISAQHCETVSNDKIREDLINHVIKEVIPAELLDEET 232          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THEMA4.987e-3161.68S-adenosylmethionine synthetase OS=Thermotoga mari... [more]
METK_CLOPS8.506e-3159.46S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP18.506e-3159.46S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK5_CAEEL9.404e-3054.95Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK_THENN1.228e-2959.81S-adenosylmethionine synthetase OS=Thermotoga neap... [more]
METK_THEAB1.604e-2963.55S-adenosylmethionine synthetase OS=Thermosipho afr... [more]
METK_PELTS2.095e-2961.82S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_CLONN3.574e-2955.86S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK_CARHZ3.574e-2959.26S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_CLOD64.667e-2962.96S-adenosylmethionine synthetase OS=Clostridium dif... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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