FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:450..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.066e-57
Identity = 103/111 (92.79%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPEFMPLSHVLAT+LGA+LTEVRKN TCPWLRPDGKTQVTVEY+N+NGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDE TIFH
Sbjct:  124 GDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNATCPWLRPDGKTQVTVEYHNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDENTIFH 234          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.392e-57
Identity = 101/111 (90.99%), Postives = 110/111 (99.10%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY+N++GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKP++PEK+LDEKTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYFNDHGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPIVPEKFLDEKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.818e-57
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT++GAKLTEVRKNGTC WLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKIGAKLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.818e-57
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT++GAKLTEVRKNGTC WLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKIGAKLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.818e-57
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNG C WLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETV+NDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVSNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.375e-57
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY+N+ GA VP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYHNDGGARVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.102e-57
Identity = 103/111 (92.79%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY N++GAM+PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDEKTIFH
Sbjct:  122 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYRNDHGAMIPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFH 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.102e-57
Identity = 102/111 (91.89%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LG++LTEVRKNGTC WLRPDGKTQVT+EYYNENGAMVPVRVHTVLISTQHDETV+ND+IAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  122 GDQGHMFGYATDETPELMPLTHVLATKLGSRLTEVRKNGTCAWLRPDGKTQVTIEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFH 232          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.102e-57
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY N+NGAM+P++VHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYCNDNGAMIPIKVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.051e-57
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT++GA+LTEVRKNGTC WLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFH 231          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK4_HORVU1.066e-5792.79S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK4_VITVI1.392e-5790.99S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK_BRARP1.818e-5792.79S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU1.818e-5792.79S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK2_BETVU1.818e-5793.69S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK2_VITVI2.375e-5792.79S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK_MUSAC3.102e-5792.79S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK_MEDTR3.102e-5791.89S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK1_SOLTU3.102e-5791.89S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK2_ARATH4.051e-5791.89S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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