FC875673 | Citrus Genome Database

Overview


Name	FC875673
Unique Name	FC875673
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	335

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOSM (S-adenosylmethionine synthetase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOSE (S-adenosylmethionine synthetase OS=Escherichia coli (strain SE11) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOLU (S-adenosylmethionine synthetase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOLI (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12) GN=metK PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOLC (S-adenosylmethionine synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOL6 (S-adenosylmethionine synthetase OS=Escherichia coli O6 GN=metK PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOL5 (S-adenosylmethionine synthetase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOHS (S-adenosylmethionine synthetase OS=Escherichia coli O9:H4 (strain HS) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECODH (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / DH10B) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

[Close]

BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECOBW (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / BW2952) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223

The following BLAST results are available for this feature:

BLAST of FC875673 vs. ExPASy Swiss-Prot

BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_ECOSM	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOSE	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLU	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLI	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLC	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOL6	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOL5	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOHS	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECODH	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOBW	3.032e-20	45.45	S-adenosylmethionine synthetase OS=Escherichia col...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT