FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO8A (S-adenosylmethionine synthetase OS=Escherichia coli O8 (strain IAI1) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO7I (S-adenosylmethionine synthetase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO5E (S-adenosylmethionine synthetase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO57 (S-adenosylmethionine synthetase OS=Escherichia coli O157:H7 GN=metK PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO55 (S-adenosylmethionine synthetase OS=Escherichia coli (strain 55989 / EAEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO27 (S-adenosylmethionine synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ECO24 (S-adenosylmethionine synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP++P ++L   T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL-DEKTIF 330
            GDQG MFG+A DETP  MP     A QL  +LT+VRK+G   +LRPDGKTQV+ EY +      PV ++ V++S+QH + V+ND I   + E VI+  +PE  + D+  IF
Sbjct:  122 GDQGMMFGFACDETPTLMPAPIYWAHQLSQRLTQVRKDGILDFLRPDGKTQVSFEYVDGK----PVHINNVVVSSQHADNVSNDTIREGIIEEVIRKTLPEGLMADDCEIF 228          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 297
            GDQG MFGYA+ +TP FMPL   LA +L  +L  VR +G   +LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+
Sbjct:  130 GDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELSYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVL 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.032e-20
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 297
            GDQG MFGYA+ +TP FMPL   LA +L  +L  VR +G   +LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+
Sbjct:  130 GDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELAYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVL 224          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ECO8A3.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO7I3.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO5E3.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO573.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO553.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO273.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO243.032e-2045.45S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_DESVM3.032e-2046.85S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_CLAMS3.032e-2049.49S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_CLAM33.032e-2049.49S-adenosylmethionine synthetase OS=Clavibacter mic... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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