FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ETP  MP+   LA +L  + +E+RK+G  PWLRPD K+QV++ Y +      P  + TV++STQHD  V++ +++  + E +IKPV+P+  L   T
Sbjct:  121 GDQGLMFGYACNETPVLMPMPIHLAHRLTERQSELRKDGRLPWLRPDAKSQVSIRYVDGK----PHSIDTVVLSTQHDPEVSHAQLSEAVIEEIIKPVLPKDMLSADT 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEWM (S-adenosylmethionine synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ET  FMP     +  L  + +EVRK+ T PWLRPD K+QVT   YN +G++    +  V++STQH E VT  ++   + E +IKPV+P K+L ++T
Sbjct:  118 GDQGLMFGYANNETDVFMPAPITYSHMLVKRQSEVRKDKTLPWLRPDAKSQVTFA-YNSDGSI--AGIDAVVLSTQHSEDVTQADLIEGVMESIIKPVLPAKWLSKET 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SALRD (S-adenosylmethionine synthetase OS=Salinibacter ruber (strain DSM 13855) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKN-GTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA  ET E MP+    + +L  +L  +RK     P+LRPD K+QVT+EY  +   M P RVHTV++STQHDE V   +I  D+++ ++   +P   LDE  I H
Sbjct:  115 GDQGLMFGYACRETEELMPMPITFSHRLVQELAHIRKETDKMPYLRPDSKSQVTIEYKEDR--MTPRRVHTVVVSTQHDEGVPQKKIREDVRDILLPRALPTDLLDEDLILH 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_NITEU (S-adenosylmethionine synthetase OS=Nitrosomonas europaea GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 312
            GDQG MFGYA DETP+ MPL    A +L  +  ++RK+G   WLRPD K+QV+V Y  E+G   P  + T++ISTQH   V  DE+   + E VIKPV+P + L
Sbjct:  120 GDQGLMFGYACDETPQLMPLPIYYAHRLVEQQAKLRKSGRLSWLRPDAKSQVSVRY--EDG--FPKNIETIVISTQHSPDVPRDELVEGVIEEVIKPVLPAEML 219          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_NITEC (S-adenosylmethionine synthetase OS=Nitrosomonas eutropha (strain C91) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 312
            GDQG MFGYA DETP+ MPL    A +L  +  ++RK+G   WLRPD K+QV+V Y +      P  + TV+ISTQHD  ++N ++   + E +IKPV+P + L
Sbjct:  120 GDQGLMFGYACDETPQLMPLPIYYAHRLVEQQAKLRKSGQLSWLRPDAKSQVSVRYIDGK----PKNIETVVISTQHDPDISNGDLFEGVVEEIIKPVLPAEML 219          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA DETPE MP +   A ++  + +E+RK+G  PWLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P ++L +
Sbjct:  121 GDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKD 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA DETPE MP +   A ++  + +E+RK+G  PWLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P ++L +
Sbjct:  121 GDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKD 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNG+ PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKPV+P ++L+  T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGSLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEDIDQKSLQEAVMEEIIKPVLPTEWLNASTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CYAP8 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 8801) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPV 294
            GDQG MFGYA +ETPEFMPL   LA ++  +L  VRK G  P+LRPDGKTQV++ Y  E+G   PV + T+LISTQH ET+           +I +DL E V++PV
Sbjct:  129 GDQGIMFGYACNETPEFMPLPISLAHRISRRLAAVRKMGELPYLRPDGKTQVSIVY--EDGK--PVGIDTILISTQHTETIDSLTENSAVQAKIKSDLWEAVVQPV 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG   PVR+  V++STQHD  +T  ++   + E +IKP+IP +     T FH
Sbjct:  119 GDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENGK--PVRLDAVVLSTQHDPEITQTQLKEAVIEEIIKPIIPAEMFHAATKFH 225          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THIDA3.960e-2044.44S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_SHEWM3.960e-2046.30S-adenosylmethionine synthetase OS=Shewanella wood... [more]
METK_SALRD3.960e-2045.54S-adenosylmethionine synthetase OS=Salinibacter ru... [more]
METK_NITEU3.960e-2049.04S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_NITEC3.960e-2046.15S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_JANMA3.960e-2044.34S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_HERAR3.960e-2044.34S-adenosylmethionine synthetase OS=Herminiimonas a... [more]
METK_ENT383.960e-2045.45S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_CYAP83.960e-2051.89S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_ACIBY3.960e-2045.95S-adenosylmethionine synthetase OS=Acinetobacter b... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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