FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 54/105 (51.43%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 291
            GDQG MFGYA +ETPE MPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:  125 GDQGIMFGYACNETPELMPLPISLAHRLARQLAEVRHNGTLDYLLPDGKTQVSVVYENDQ----PVAIDTILISTQHTAEVGGMSDEQGIRERITEDLWTHVVEP 225          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA DETPE MP     A +L  + + +R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + E +IKPV+P + L E
Sbjct:  121 GDQGLMFGYACDETPELMPFPIYYAHRLVERQSLLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSVDTVVLSTQHSPDITQAQIREAVIEEIIKPVLPAEMLKE 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_KLEP3 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae (strain 342) GN=metK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +    +   + E +IKP +P ++L+  T F
Sbjct:  118 GDQGLMFGYATNETDVLMPAPVTYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHAEDIDQKSLQEAVMEEIIKPTLPTEWLNASTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HAEIG (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittGG) GN=metK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP +   A +L  K  EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F
Sbjct:  118 GDQGIMFGYATNETDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWLSKETKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CHLL2 (S-adenosylmethionine synthetase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=metK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 58/119 (48.74%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNG-TCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA  ETPE MP +   A QL  KL E+RK G    +LRPD K+QVT+EY ++  A    RV  V++STQHD       E      I  D+ E+V+K VIP + LDE T FH
Sbjct:  125 GDQGMMFGYACTETPELMPAAIQFAQQLVKKLAEIRKEGKIMTYLRPDAKSQVTLEYIDDKVA----RVDAVVVSTQHDPEPAGMSEADFQAVIRKDIIENVVKVVIPAELLDENTKFH 239          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_LEUCK (S-adenosylmethionine synthetase OS=Leuconostoc citreum (strain KM20) GN=metK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 46/111 (41.44%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG +FGYAT+ET  ++PL+  L+ +L  K+ +VR+ G   +LRPD K +V+VE  +++      R+  V++STQHDE V+ +++  D++E VI  V+P++ +D+KTI++
Sbjct:  119 GDQGMVFGYATNETDSYLPLTLALSHRLMRKIRDVREAGIVGYLRPDAKAEVSVELDDQDHI---TRIAAVVLSTQHDENVSLEQLRKDVRELVIDQVLPQELVDDKTIYY 226          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HAEIE (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittEE) GN=metK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP +   A +L  K  EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F
Sbjct:  118 GDQGIMFGYATNETDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPTEWLSKETKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HAEI8 (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=metK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP +   A +L  K  EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F
Sbjct:  118 GDQGIMFGYATNETDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPTEWLSKETKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA DETP  MP     A +L  +  E+RK+G  PWLRPD K+Q+T  Y    G  +P R+ TV++STQH   + +  ++  + E ++KPV+P + +  +T F
Sbjct:  120 GDQGLMFGYACDETPTLMPFPIYYAHRLVQRQAELRKDGRLPWLRPDAKSQITCVYDAATG--LPKRIDTVVLSTQHSPDIDHKTLSEAVIEDIVKPVLPPEMITPETKF 227          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ACIAD (S-adenosylmethionine synthetase OS=Acinetobacter sp. (strain ADP1) GN=metK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.822e-20
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA+ ET   MP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG  +PVR+  V++STQHD  ++  ++   + E ++KPVIP +     T FH
Sbjct:  119 GDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENG--MPVRLDAVVLSTQHDPEISQAQLKEAVIEEIVKPVIPSEMFHAGTKFH 225          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SYNS96.755e-2051.43S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_RALEH6.755e-2047.17S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_KLEP36.755e-2045.45S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]
METK_HAEIG6.755e-2045.45S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CHLL26.755e-2048.74S-adenosylmethionine synthetase OS=Chlorobium limi... [more]
METK_LEUCK8.822e-2041.44S-adenosylmethionine synthetase OS=Leuconostoc cit... [more]
METK_HAEIE8.822e-2045.45S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_HAEI88.822e-2045.45S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CHRVO8.822e-2042.73S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_ACIAD8.822e-2045.05S-adenosylmethionine synthetase OS=Acinetobacter s... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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