FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THICR (S-adenosylmethionine synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=metK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA++ET   MP     A +L  K  E+RK G   WLRPD K+QVT+ Y  E+G   PV V  V++STQH   V N ++   + E +IKPV+PE +L   T +H
Sbjct:  118 GDQGLMFGYASNETDVLMPAPIYFAHRLMEKQAELRKAGKLDWLRPDAKSQVTLRY--EDGQ--PVAVDAVVLSTQHSPEVDNKDLHEAVMEEIIKPVLPEGWLHSGTQYH 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_EDWI9 (S-adenosylmethionine synthetase OS=Edwardsiella ictaluri (strain 93-146) GN=metK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYAT+ET   MP     A +L  +   VRKNGT PWLRPD K+QVT +Y  ++G +    +  V++STQH +T++  ++   + E +IKPV+P ++L   T
Sbjct:  118 GDQGIMFGYATNETDVLMPAPITYAHRLMERQARVRKNGTLPWLRPDAKSQVTFQY--DDGKI--AGIDAVVLSTQHADTISQKDLQEAVMEEIIKPVLPAEWLSAST 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYAT+ET  +MP     + +L  +  E+RK+G  PWLRPD K+Q+T  Y   +    P  V  V++STQHD  +  DE+   +K  +I+ VIP ++L E T +H
Sbjct:  119 GDQGLMFGYATNETDSYMPAPIHYSHRLVERQAELRKHGLLPWLRPDAKSQLTFRY---DAQGKPCAVDAVVLSTQHDPDIDQDELREMVKREIIEEVIPAEWLTETTKYH 226          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA+ ET   MP     + +L A+  E+RKN   PWLRPDGK Q+T++Y  + G   PV + T++ STQH   +++ ++   ++E +IKPV+PE++L   T ++
Sbjct:  118 GDQGLMFGYASRETDVCMPAPIAYSHRLMARQAELRKNNKLPWLRPDGKCQLTLKY--DQGK--PVAIDTIVFSTQHAPEISHKDLVEAVREEIIKPVLPEEWLSAATRYY 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_VIBPA (S-adenosylmethionine synthetase OS=Vibrio parahaemolyticus GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA +ET   MP     + +L  K  EVRKNGT PWLRPD K+QVT +Y  + G +  V +  V++STQH ++++  ++   + E +IKPV+P +++ + T F
Sbjct:  118 GDQGIMFGYACNETEVLMPAPITYSHRLVEKQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKI--VGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPAEWISKDTNF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SYNPX (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH8102) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 291
            GDQG MFGYA +ETPE MPL   LA +L  +L EVR NG+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P
Sbjct:  125 GDQGIMFGYACNETPELMPLPISLAHRLAKRLAEVRHNGSLEYLLPDGKTQVSVVYENDK----PVAIDTILISTQHTAEVAGISDEQGIRERITEDLWTHVVEP 225          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEDO (S-adenosylmethionine synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ET   MP     A  L  + +EVRK+GT PWLRPD K+QVT  Y  E+G +  V +  +++STQH E VT  ++   + E +IKPV+P ++L++ T
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKDGTLPWLRPDAKSQVTFAY--EDGKI--VGIDAIVLSTQHREDVTQADLIEGVMETIIKPVLPAQWLNKDT 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_RHOBA (S-adenosylmethionine synthetase OS=Rhodopirellula baltica GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP 300
            GDQG MFGYA  +TPE MPL   L+ ++  ++TE R N    WLRPD K+QVTVEY        PVR+  V++S QH   V++DEI   + E+V+KP IP
Sbjct:  124 GDQGLMFGYACKDTPELMPLPIALSHRIINRITEARFNKEVDWLRPDNKSQVTVEYDGNR----PVRIEAVVVSAQHGPDVSHDEIEKFVIENVVKPSIP 219          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA DETPE MP     + +L  + +++R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + E +IKPV+P + L +
Sbjct:  121 GDQGLMFGYACDETPELMPFPIYYSHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVDGR----PHSVDTVVLSTQHAPDITQAQIREAVIEEIIKPVLPPEMLKD 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_PELPB (S-adenosylmethionine synthetase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 58/119 (48.74%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNG-TCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYA  ETP  MP +   A  L  KL E+RK G    +LRPD K+QVT+EY NE    V  RV  V++STQHD       E    + I  D+ E+VIK VIP   +DE T FH
Sbjct:  125 GDQGMMFGYACTETPVLMPAAIQFAQHLMKKLAEIRKEGKIMTYLRPDAKSQVTLEYENE----VVKRVDAVVVSTQHDPEPEGVSEAAWQEVIKNDIIENVIKVVIPADLIDENTKFH 239          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THICR1.152e-1946.85S-adenosylmethionine synthetase OS=Thiomicrospira ... [more]
METK_EDWI91.152e-1944.44S-adenosylmethionine synthetase OS=Edwardsiella ic... [more]
METK_CHRSD1.152e-1943.24S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_AMOPS1.152e-1942.34S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_VIBPA1.505e-1943.64S-adenosylmethionine synthetase OS=Vibrio parahaem... [more]
METK_SYNPX1.505e-1950.48S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHEDO1.505e-1946.30S-adenosylmethionine synthetase OS=Shewanella deni... [more]
METK_RHOBA1.505e-1949.00S-adenosylmethionine synthetase OS=Rhodopirellula ... [more]
METK_RALEJ1.505e-1945.28S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_PELPB1.505e-1948.74S-adenosylmethionine synthetase OS=Pelodictyon pha... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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