FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HAHCH (S-adenosylmethionine synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYAT+ET   MP     + +L  +   +RKN   PWLRPD K+QVT+ Y  ENG   PV V  V++STQH   V   +I   + E +IK V+PE++L   T +H
Sbjct:  119 GDQGLMFGYATNETDVLMPAPIYYSHRLVERQAYLRKNSILPWLRPDAKSQVTLRY--ENGK--PVAVEAVVLSTQHTPDVKQSDIREAVMEEIIKHVLPEEWLHSNTQYH 225          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BORPE (S-adenosylmethionine synthetase OS=Bordetella pertussis GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  PE  +  KT F
Sbjct:  122 GDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKF 227          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BORPA (S-adenosylmethionine synthetase OS=Bordetella parapertussis GN=metK PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  PE  +  KT F
Sbjct:  122 GDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKF 227          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BORBR (S-adenosylmethionine synthetase OS=Bordetella bronchiseptica GN=metK PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  PE  +  KT F
Sbjct:  122 GDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKF 227          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BAUCH (S-adenosylmethionine synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYAT+ET   MP     A +L A+ + VRKNGT PWL PD K+QVT  Y  + G +  V + TV+ STQH E +T   +   + E +IKPV+P + L E T F
Sbjct:  118 GDQGFMFGYATNETDVLMPAPITYAHRLVARQSLVRKNGTLPWLCPDAKSQVTFAY--DEGKV--VGIDTVVFSTQHVENITLPNLKEAVMEEIIKPVLPIELLSEHTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA DETPE MP     A  +  +L + R+ G   +LRPDGK+QV+VEY +      PVR+ TV++STQH E+V+N  +   ++E VI   +P++ LD KT
Sbjct:  115 GDQGMMFGYACDETPELMPAPIQYAHAVTKQLAKARRAGL-DFLRPDGKSQVSVEYRDGR----PVRIDTVVVSTQHAESVSNKRLHEAVREQVIAKALPKRLLDRKT 217          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SYNY3 (S-adenosylmethionine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=metK PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV----TNDEIAADLKEHVIKPVIPEKYLD 315
            GDQG MFGYA +ETPE MPL   LA ++  +L+EVRK+G   +LRPDGKTQV++ Y  E+G+  PV + T+LISTQHDE +     ND + A +K  +   V+   + D
Sbjct:  135 GDQGLMFGYACNETPELMPLPISLAHRIALRLSEVRKSGQLAYLRPDGKTQVSILY--EDGS--PVAIDTILISTQHDEHIGDITDNDAVQAKIKADLWDVVVGHCFSD 239          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_HAHCH1.505e-1945.95S-adenosylmethionine synthetase OS=Hahella chejuen... [more]
METK_BORPE1.505e-1945.45S-adenosylmethionine synthetase OS=Bordetella pert... [more]
METK_BORPA1.505e-1945.45S-adenosylmethionine synthetase OS=Bordetella para... [more]
METK_BORBR1.505e-1945.45S-adenosylmethionine synthetase OS=Bordetella bron... [more]
METK_BAUCH1.505e-1948.18S-adenosylmethionine synthetase OS=Baumannia cicad... [more]
METK_ANAD21.505e-1947.22S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_SYNY31.965e-1948.62S-adenosylmethionine synthetase OS=Synechocystis s... [more]
METK_SHEB91.965e-1945.45S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB81.965e-1945.45S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB51.965e-1945.45S-adenosylmethionine synthetase OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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