FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEB2 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS223) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA +ET   MP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +  V +  V++STQH + V+  ++   + E +IKPV+P ++L++ T F
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKI--VGIDAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKF 223          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_RALPJ (S-adenosylmethionine synthetase OS=Ralstonia pickettii (strain 12J) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA DETPE MP     A +L  + +++R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   ++ + I   + E +IKPV+P   L E
Sbjct:  121 GDQGLMFGYACDETPELMPFPIYYAHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSVDTVVLSTQHAPEMSQEAIREAVIEEIIKPVLPSHMLAE 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_PROMA (S-adenosylmethionine synthetase OS=Prochlorococcus marinus GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV---IPEKYLDEKTIF 330
            GDQG MFG+A DETPE MPL   LA +L  +L +VR +GT  +L PDGKTQV+V Y N      P  + T+LISTQH         E    ++I+ DL E V+KP    +P K + EKT F
Sbjct:  125 GDQGIMFGFACDETPELMPLPISLAHRLSRRLAKVRHDGTLKYLLPDGKTQVSVLYENNK----PTAIDTILISTQHTAEVEGITSEKGIREQISKDLWELVVKPATEDLPIKPIQEKTRF 241          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_PASMU (S-adenosylmethionine synthetase OS=Pasteurella multocida GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYAT+ET   MP +   A +L  +  +VRK GT PWLRPD K+QVT++Y +       V V  V++STQH ++++  ++   + E +IKPV+P ++L ++T
Sbjct:  118 GDQGIMFGYATNETEVLMPAAITYAHRLMERQAKVRKEGTLPWLRPDAKSQVTLKYEDHK----IVGVDAVVLSTQHCDSISQHDLHEAVMEEIIKPVLPAEWLSKET 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_DESMR (S-adenosylmethionine synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFG+A DET   MP     A +L  +LTEVRK+G   +LRPDGKTQV VEY +      PVR+  V++++QH E +++ ++   +K+ VI   +PE  +D+ T
Sbjct:  122 GDQGMMFGFACDETETLMPAPIYWAHKLSRRLTEVRKSGVLDFLRPDGKTQVAVEYVDGK----PVRIDNVVVASQHAENISHADLCDAVKKEVIFHTLPESLVDKNT 225          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_CYAA5 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV----TND----EIAADLKEHVIKPVI 297
            GDQG MFGYA +ETPE MPL   LA +   +L  VRK G   +LRPDGKTQV++ Y  E+G  +PV + T+LISTQHDET+     ND    +I +DL + V+ PV+
Sbjct:  129 GDQGIMFGYACNETPELMPLPISLAHRFSRRLAAVRKTGDLGYLRPDGKTQVSIVY--EDG--IPVGIDTILISTQHDETIDSITDNDGVQAKIKSDLWDAVVLPVL 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 330
            GDQG MFGYA DETP+ MP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  PE  +  +T F
Sbjct:  122 GDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKF 227          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.965e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA++ET   MP     A +L  +  EVR NG  PWLRPD K+QVT+ Y +      PV V TV++STQH   +T  ++   + E +IKPV+PE+++  +T
Sbjct:  118 GDQGLMFGYASNETDVLMPAPITYAHRLVQRQAEVRCNGQLPWLRPDAKSQVTLRYVDGR----PVAVDTVVLSTQHAPDLTQAQVHEAVIEEIIKPVLPEQWITGET 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNG  PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +   ++   + E +IKPV+P +++   T
Sbjct:  118 GDQGLMFGYATNETSVLMPAPITYAHRLVERQAEVRKNGALPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEDINQKDLHEAVMEEIIKPVLPAEWITAHT 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_YERPS (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYAT+ET   MP     A +L  +  EVRKNG  PWLRPD K+QVT +Y  ++G +  V +  V++STQH E +   ++   + E +IKPV+P +++   T
Sbjct:  118 GDQGLMFGYATNETSVLMPAPITYAHRLVERQAEVRKNGALPWLRPDAKSQVTFQY--DDGKI--VGIDAVVLSTQHSEDINQKDLHEAVMEEIIKPVLPAEWITAHT 221          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHEB21.965e-1945.45S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_RALPJ1.965e-1946.23S-adenosylmethionine synthetase OS=Ralstonia picke... [more]
METK_PROMA1.965e-1947.11S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PASMU1.965e-1943.52S-adenosylmethionine synthetase OS=Pasteurella mul... [more]
METK_DESMR1.965e-1944.44S-adenosylmethionine synthetase OS=Desulfovibrio m... [more]
METK_CYAA51.965e-1951.40S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_BORPD1.965e-1945.45S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_ALHEH1.965e-1945.37S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]
METK_YERPY2.567e-1944.44S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPS2.567e-1944.44S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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