FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:450..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_FRASC (S-adenosylmethionine synthetase 2 OS=Frankia sp. (strain CcI3) GN=metK2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKP 291
            GDQG MFG+A DETPE MPL   LA +L  +L+ VRK G   +LRPDGKTQVT+EY +      P R+ TV++S+QH   +  D  +A D+ E+V++P
Sbjct:  129 GDQGLMFGFACDETPELMPLPIALAHRLARRLSAVRKEGQIGYLRPDGKTQVTIEYVDGK----PARLDTVVVSSQHAADIDLDTLLAPDIAEYVVEP 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_VIBVY (S-adenosylmethionine synthetase OS=Vibrio vulnificus (strain YJ016) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ET   MP     A +L  +  +VRK+GT PWLRPD K+QVT +Y  E G +  V +  V++STQH ++++  ++   + E +IKPV+P ++L+++T
Sbjct:  118 GDQGIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPWLRPDAKSQVTFQY--EQGKI--VGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKET 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_VIBVU (S-adenosylmethionine synthetase OS=Vibrio vulnificus GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ET   MP     A +L  +  +VRK+GT PWLRPD K+QVT +Y  E G +  V +  V++STQH ++++  ++   + E +IKPV+P ++L+++T
Sbjct:  118 GDQGIMFGYACNETEVLMPAPITYAHRLMERQAKVRKDGTLPWLRPDAKSQVTFQY--EQGKI--VGIDAVVLSTQHCDSISTPDLREAVMEEIIKPVLPSEWLNKET 221          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SHEPA (S-adenosylmethionine synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA +ET   MP     + +L  + +EVRK+ T PWLRPD K+QVT   YN +G++    +  V++STQH E VT  ++   + E +IKPV+P K+L + T
Sbjct:  118 GDQGLMFGYANNETDVLMPAPITYSHKLVKRQSEVRKDKTLPWLRPDAKSQVTFA-YNSDGSI--AGIDAVVLSTQHSEDVTQADLIEGVMETIIKPVLPAKWLSKDT 222          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_HELHP (S-adenosylmethionine synthetase OS=Helicobacter hepaticus GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE 318
            GDQG MFGYA  ETP  MPL   L+ +L   L + RK+GT P+LRPDGK+QVTV Y  E+G   PV + T++ISTQH        +   + E +++ V+P++YL++
Sbjct:  118 GDQGLMFGYACKETPSLMPLPIWLSHRLTEGLAKKRKDGTLPFLRPDGKSQVTVRY--EDGK--PVSIDTIVISTQHSPETQQSHLKDAVIEEIVQKVLPQEYLND 219          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA DETPE MP     A  +  +L + R+ G    LRPDGK+QV+VEY +      PVR+ TV++STQH E+V+N  +   ++E VI   +P++ LD KT
Sbjct:  115 GDQGMMFGYACDETPELMPAPIQYAHAVTKQLAKARRAGL-DLLRPDGKSQVSVEYRDGR----PVRIDTVVVSTQHAESVSNKRLHEAVREQVIAKALPKRLLDRKT 217          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ANADF (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFGYA DET E MP     A  +  +L + R+ G   +LRPDGK+QVTVEY    G  V  R+ TV++STQH E+V+N ++ A L+E VI   +P+K +D KT
Sbjct:  115 GDQGMMFGYACDETNELMPAPIQYAHAVTRQLAKARRGGL-DFLRPDGKSQVTVEY---RGGKV-ARIDTVVVSTQHSESVSNRKLHAALREEVIAKALPKKLVDRKT 217          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFG+A DET   MP     A +L  +   VRK+G  PWLRPD K+QVTV Y ++     PV + TV++STQH   +++ ++   ++E +IKPV+P + + + T
Sbjct:  121 GDQGLMFGFACDETDVLMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDT 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKT 324
            GDQG MFG+A DET   MP     A +L  +   VRK+G  PWLRPD K+QVTV Y ++     PV + TV++STQH   +++ ++   ++E +IKPV+P + + + T
Sbjct:  121 GDQGLMFGFACDETDVLMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDT 224          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_XANOR (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae GN=metK PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRK--NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYAT+ET  FMP +  L+ +L  +  ++RK  N    WLRPD K+QVT+ Y  E+G  V   +  V++STQHD  V   ++   ++E ++KPV+P K+L + T FH
Sbjct:  118 GDQGLMFGYATNETDSFMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFH 226          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_FRASC2.567e-1950.00S-adenosylmethionine synthetase 2 OS=Frankia sp. (... [more]
METK_VIBVY3.353e-1943.52S-adenosylmethionine synthetase OS=Vibrio vulnific... [more]
METK_VIBVU3.353e-1943.52S-adenosylmethionine synthetase OS=Vibrio vulnific... [more]
METK_SHEPA3.353e-1945.37S-adenosylmethionine synthetase OS=Shewanella peal... [more]
METK_HELHP3.353e-1946.23S-adenosylmethionine synthetase OS=Helicobacter he... [more]
METK_ANASK3.353e-1947.22S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANADF3.353e-1949.07S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ACIF53.353e-1942.59S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_ACIF23.353e-1942.59S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_XANOR4.379e-1944.25S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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