FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:450..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.429e-56
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.479e-56
Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT++GAKLTEVRKNGTC WLRP+GKTQVT EYYN+NGAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKIGAKLTEVRKNGTCRWLRPNGKTQVTGEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.479e-56
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDGKTQVTVEY NE+GA VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDEKTIFH
Sbjct:  124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFH 234
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 4.479e-56
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDGKTQVTVEY NE+GA VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE+YLDEKTIFH
Sbjct:  124 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFH 234
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 5.850e-56
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDGKTQVTVEY NE GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  123 GDQGIMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 233
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.978e-56
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WL+PDGKTQVTVEY N+NGAM+P+RVHTVLISTQHDETVTNDEIA DLKEH IKPVIPEKYLDEKTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCRWLKPDGKTQVTVEYCNDNGAMIPIRVHTVLISTQHDETVTNDEIARDLKEHAIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 1.303e-55
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDG TQVTVEYYN+ GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLD KTI H
Sbjct:   96 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGNTQVTVEYYNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDSKTICH 206
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.792e-55
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY NE GAM+P+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIP KYLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNEGGAMIPIRVHTVLISTQHDETVTNDEIAVDLKEHVIKPVIPAKYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.792e-55
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP KYLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPAKYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.792e-55
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP KYLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPAKYLDENTIFH 231
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_SOLLC3.429e-5691.89S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK3_BRAJU4.479e-5690.99S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_ORYSJ4.479e-5692.79S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI4.479e-5692.79S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_TRIMO5.850e-5693.69S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK_SOLBR9.978e-5690.09S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK1_PEA1.303e-5590.99S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK4_BRAJU3.792e-5590.09S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK3_SOLLC3.792e-5590.09S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU3.792e-5590.09S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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