FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:450..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.952e-55
Identity = 99/111 (89.19%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGA+LTEVRK+GTCPWLRPDGKTQVTVEY NE GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPV+P +YLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPSQYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.467e-55
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY N+ GAM+P+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLD+ TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.882e-54
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC W+RPDGKTQVTVEY NE+GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFH
Sbjct:  123 GDQGIMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWVRPDGKTQVTVEYLNEDGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDENTIFH 233
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.882e-54
Identity = 97/111 (87.39%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKNGTCPWLRPDGKTQVTVEY NE GAMVP+RVHTVL+STQHDETVTN++IA DLKEHVIKPVIP +YLD++TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYRNEGGAMVPIRVHTVLVSTQHDETVTNEQIAKDLKEHVIKPVIPPQYLDDQTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.458e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLATQLGAKLTEVRKN TCPWLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDE VTN++IA DLKEHVIKPVIP KYLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATQLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDEGVTNEQIAQDLKEHVIKPVIPAKYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.192e-54
Identity = 96/111 (86.49%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY N+NGAM+P+RVHT+LISTQHDETVTND+IA DLKEHVIKPV+P +YLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMIPLRVHTILISTQHDETVTNDQIAQDLKEHVIKPVVPAEYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.192e-54
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HV AT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETVTND+IA DLKEHVIKPVIP +YLDE TIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVWATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDNGAMVPIRVHTVLISTQHDETVTNDQIAQDLKEHVIKPVIPSQYLDENTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.151e-54
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQGHMFGYATDETPE MPL+HVLAT+LGAKLTEVRKN TCPWLRPDGKTQVTVEY NE GAMVP+RVHT+LISTQHDE VTN++IAADLKEHVIKPVIP +YLD+KTIFH
Sbjct:  121 GDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTILISTQHDENVTNEQIAADLKEHVIKPVIPVQYLDDKTIFH 231
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.339e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE MPL+H+LAT+LGA+LTEVRKNGTC WLRPDGKTQVT+EY NE GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFH
Sbjct:  123 GDQGIMFGYATDETPELMPLTHMLATKLGARLTEVRKNGTCAWLRPDGKTQVTIEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPGKYLDENTIFH 233
[Close]
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.339e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE MPL+H+LAT+LGA+LTEVRKNGTC WLRPDGKTQVT+EY NE GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP KYLDE TIFH
Sbjct:  123 GDQGIMFGYATDETPELMPLTHMLATKLGARLTEVRKNGTCAWLRPDGKTQVTIEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPGKYLDENTIFH 233
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_PICSI4.952e-5589.19S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK3_ARATH6.467e-5589.19S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK3_HORVU1.882e-5490.99S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK1_VITVI1.882e-5487.39S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK2_TOBAC2.458e-5489.19S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK2_PETHY4.192e-5486.49S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK1_TOBAC4.192e-5488.29S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK4_POPTR7.151e-5487.39S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK2_HORVU9.339e-5489.19S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK1_HORVU9.339e-5489.19S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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