FC875673

Overview
NameFC875673
Unique NameFC875673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.692e-35
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ VLA +L  ++ ++R++G  PWLRPD KTQVTV+Y  +NGA++PVR+HT++IS QH+E +T + +   LKE VIK V+P KYLDE T++H
Sbjct:  134 GDQGLMFGYATDETEECMPLTIVLAHKLNTRIADLRRSGVLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEAMQEALKEQVIKAVVPAKYLDEDTVYH 244          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.163e-34
Identity = 65/111 (58.56%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ +LA +L A++ E+R++G  PWL+PD KTQVTV+Y  +NGA++P+RVHTV+IS QH+E +T +++   LKE VI+ V+P +YLDE TI+H
Sbjct:  134 GDQGLMFGYATDETEECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYH 244          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.073e-33
Identity = 63/111 (56.76%), Postives = 85/111 (76.58%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE +PL+ +LA QL A + + R++G+ PWLRPD KTQVT+EY ++ GA+VP +V TV++S QH E +T +E+  ++ E +IK  IP KYLDE T+FH
Sbjct:  129 GDQGIMFGYATDETPELLPLTLLLAHQLNANMAKARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFH 239          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.079e-33
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE  PL+ + A +L A ++  R++G+ PWLRPD KTQVT+EY ++NGA+VP+RV TV++S QH   +T +E+  ++ E +IK  IP KYLDEKT++H
Sbjct:  132 GDQGIMFGYATDETPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYH 242          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.510e-32
Identity = 58/111 (52.25%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDETPE +PL+ +LA +L A ++  R++G+ PWLRPD KTQVT+EY  ENGA++P RV T+++S QH ++++ +++ +++ E +IKP +P   LDEKT++H
Sbjct:  120 GDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYH 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.312e-31
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  121 GDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.312e-31
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  121 GDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.238e-31
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 333
            GDQG MFGYATDET E MPL+ +L+ ++ A+L ++R+NGT PW+RPD K+QVT+EY + +GA +P+RVHTV++STQH   VT +++   +   VIK VIP   LDE T+FH
Sbjct:  120 GDQGIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFH 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THESQ (S-adenosylmethionine synthetase OS=Thermotoga sp. (strain RQ2) GN=metK PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.987e-31
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEK 321
            GDQG MFGYAT+ETPE+MPL   LA +L  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + EHVI PVIPE+Y D+K
Sbjct:  128 GDQGIMFGYATNETPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDK 230          
BLAST of FC875673 vs. ExPASy Swiss-Prot
Match: METK_THEP1 (S-adenosylmethionine synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metK PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.987e-31
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEK 321
            GDQG MFGYAT+ETPE+MPL   LA +L  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + EHVI PVIPE+Y D+K
Sbjct:  128 GDQGIMFGYATNETPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDK 230          
The following BLAST results are available for this feature:
BLAST of FC875673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_MOUSE5.692e-3558.56S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN2.163e-3458.56S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_ASCIM1.073e-3356.76S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK_NEUCR4.079e-3355.86S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_SCHPO4.510e-3252.25S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK4_CAEEL1.312e-3157.66Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL1.312e-3157.66Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK1_CAEEL2.238e-3154.95Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_THESQ4.987e-3161.68S-adenosylmethionine synthetase OS=Thermotoga sp. ... [more]
METK_THEP14.987e-3161.68S-adenosylmethionine synthetase OS=Thermotoga petr... [more]

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Properties
Property NameValue
Genbank descriptionC31401E10EF CTVClemen1 Citrus clementina cDNA clone C31401E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875673 ID=FC875673; Name=FC875673; organism=Citrus clementina; type=EST; length=335bp
GGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATT
TATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCG
AGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACA
CAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGAG
AGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAATG
ATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCT
GAGAAGTACCTTGATGAGAAGACTATCTTCCATCT
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