FC875674

Overview
NameFC875674
Unique NameFC875674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875674_ssr681 microsatellite FC875674_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:5..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 152/186 (81.72%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D  LAAQ
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQ 196
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.074e-85
Identity = 153/202 (75.74%), Postives = 168/202 (83.17%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA-AQQHMKXXXXXXXVNSPDE 712
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D A A Q+ +          PDE
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDE 212
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.403e-85
Identity = 150/186 (80.65%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D  LAAQ
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQ 195
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.832e-85
Identity = 150/186 (80.65%), Postives = 165/186 (88.71%), Query Frame = 2 
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID--LAAQ 661
            FKLV+VGDGGTGKTTFVKRHLTGEFEK+Y  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D  LAAQ
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQ 195
[Close]
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.126e-85
Identity = 148/189 (78.31%), Postives = 164/189 (86.77%), Query Frame = 2 
Query:  107 SFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQHMK 673
            +FKLV+VGDGGTGKTTFVKRH TGEF  RY  T+GVEVHPL+F T+CG IRF  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E  ID    Q M+
Sbjct:    7 AFKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAIDPEVMQAMQ 195
The following BLAST results are available for this feature:
BLAST of FC875674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_PONAB4.822e-8681.72GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE4.822e-8681.72GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA4.822e-8681.72GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN4.822e-8681.72GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CANFA4.822e-8681.72GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN4.822e-8681.72GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_XENTR1.074e-8575.74GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_SALSA1.403e-8580.65GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU1.832e-8580.65GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
GSP1_YARLI3.126e-8578.31GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]

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Properties
Property NameValue
Genbank descriptionC31401E11EF CTVClemen1 Citrus clementina cDNA clone C31401E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875674 ID=FC875674; Name=FC875674; organism=Citrus clementina; type=EST; length=716bp
GACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATC
CAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGAT
TATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGAC
TACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAGATATGAAC
CGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGA
AAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGG
TCTTAGAGATGGATATTACATCCATGGGCAATGTGCTATCATCATGTTTG
ATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGAT
CTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGT
CGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGA
AGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTT
GAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTT
GCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATT
TGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAAC
TCTCCAGATGAGATGA
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