FC875674

Overview
NameFC875674
Unique NameFC875674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV++G GG GK+    + + G F ++Y+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV++G GG GK+    + + G F ++Y+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV++G GG GK+    + + G F ++Y+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 51/159 (32.08%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 577
            FK V+ GD G GKT+ + R     F + +  TIG+E      +     I+   WDTAG+++F  + + +Y      II++DVT + +++NVP+W  D+ R   EN+  ++ GNK D+ +++V    +   F    ++ + EISAK + N E+ F+ L +
Sbjct:    9 FKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVK 165          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            FK +I+G+ GTGKT  ++R+   +F    + TIG E        +   ++   WDTAGQE+F  +   YY      ++++D+T R ++  V  W  D   +    + ++L GNK D+++   +    +  TF ++  LQ+ E SA +  N +  F    R L
Sbjct:   10 FKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALTGENIDDAFTSCVRVL 171          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   83 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 562
            + Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      + +  +++   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D++  +V    K      +    ++E SAK N +  + F
Sbjct:   15 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 176          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 46/163 (28.22%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  107 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++D+T + ++ N+  W  ++     +++ ++L GNKVD  ++R VK +      ++  L + E SA++  N +  F  +A++L
Sbjct:   67 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 490
            K+VI+GDG  GKT+ +     G F + YEPT+  E +  D F +   I    WDTAGQE+F  LR   Y   QC ++ F + +R + +NV   W  ++   CE + +VL   K D++N + ++  +T
Sbjct:   18 KIVILGDGACGKTSLLNVFTRGYFPEVYEPTV-FENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAIT 143          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RB33A_MOUSE (Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   89 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISA---KSNYNFEKPFLYLARKLAGDPNL 601
            Q V    FK++++GD   GKT    R   G F  + E TIGV+           KI+   WDTAGQE+F   + + YY +    + ++DVT   ++ N+  W ++ C    V   +P VL GNK D++ + QV +   + F    N+  +E SA   K + N E  F+ LA +L    +L
Sbjct:   30 QYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQE-CNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSL 208          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RB33A_HUMAN (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   89 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISA---KSNYNFEKPFLYLARKLAGDPNL 601
            Q V    FK++++GD   GKT    R   G F  + E TIGV+           KI+   WDTAGQE+F   + + YY +    + ++DVT   ++ N+  W ++ C    V   +P VL GNK D++ + QV +   + F    N+  +E SA   K + N E  F+ LA +L    +L
Sbjct:   30 QYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQE-CNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSL 208          
The following BLAST results are available for this feature:
BLAST of FC875674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_HUMAN3.410e-1530.06Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK3.410e-1530.06Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN3.410e-1530.06Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RABF1_DICDI3.410e-1532.08Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB4A_ECHMU3.410e-1529.01Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB3B_HUMAN3.410e-1527.61Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB26_MOUSE3.410e-1528.22Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RHO3_YEAST4.453e-1535.43GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RB33A_MOUSE4.453e-1532.22Ras-related protein Rab-33A OS=Mus musculus GN=Rab... [more]
RB33A_HUMAN4.453e-1532.22Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC31401E11EF CTVClemen1 Citrus clementina cDNA clone C31401E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875674 ID=FC875674; Name=FC875674; organism=Citrus clementina; type=EST; length=716bp
GACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATC
CAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGAT
TATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGAC
TACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAGATATGAAC
CGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGA
AAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGG
TCTTAGAGATGGATATTACATCCATGGGCAATGTGCTATCATCATGTTTG
ATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGAT
CTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGT
CGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGA
AGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTT
GAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTT
GCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATT
TGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAAC
TCTCCAGATGAGATGA
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