FC875674

Overview
NameFC875674
Unique NameFC875674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT-------FHRKKNLQYYEISAKSNYNFEKPF 562
            KLV++GDG  GKT  +  +    F + Y PT+  + + ++       I    WDTAGQE++  LR   Y +    +I F +T  ++++NV T W+ ++   C  +P +L G K+D ++        +Q   K +T         R K ++Y E SAK++ N ++ F
Sbjct:    8 KLVVIGDGAVGKTCLLISYANNRFPEDYIPTV-FDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVF 172          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 640
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLLESIEPDIVKPHL 197          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 640
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLMESIEPDVVKPHL 197          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  125 VGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYL 571
            +G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q     ++   ++  E SAK N+N ++ FL L
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKL 153          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 487
            KLVIVGDG  GKT  +  + T  F   Y PT+  E +      +  KI    WDTAGQE +  LR   Y      ++ F V A  +Y+NV   W  ++ + C N+PI+L G K+D+++   + K++
Sbjct:    5 KLVIVGDGAVGKTCMLISYTTNAFPNEYIPTV-FENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRL 129          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 48/159 (30.19%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVH----------PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 547
            K + +GD G GKT+ + ++  G+F  ++  T+G++            P        +I    WDTAGQE+F  L   ++      +++FD+T   ++ NV  W     +   CEN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct:   11 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 169          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV+VGDGG GK+    + +   F   Y+PTI             G +     DTAGQE++  +R+ Y   G+  ++++++T+R ++  + T+++ + RV   +  P+VL  NK D++  +V  +A+     +  +  Y E SAK   N E+ F  L R +
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGAL-LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV++G GG GK+    + + G F ++Y+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++PI+L GNK D+++ +V  K   Q    +  +  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  107 SFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 553
            + K+V++GD   GKT+ V R  +G+F  ++  TIG       +EV   D  T   +I    WDTAGQE++  L   YY     A+I+F++    + +   TW +DL    +   +++ GNK D+   +   +       + L Y  +SAK+ YNF+
Sbjct:    4 TIKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTE-KRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQGTQVIIVGNKYDLVCEEHSGEVTIPAELQGLPYVAVSAKTGYNFD 158          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 562
            KLVIVGDG  GKT  +     G+F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176          
The following BLAST results are available for this feature:
BLAST of FC875674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACC_DICDI9.921e-1529.52Rho-related protein racC OS=Dictyostelium discoide... [more]
RAB38_MOUSE9.921e-1531.05Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN9.921e-1531.05Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RAB12_RAT9.921e-1530.07Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RECG_ENTHI1.296e-1435.71Rho-related protein racG OS=Entamoeba histolytica ... [more]
RB27A_MOUSE1.296e-1430.19Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAS_SCHPO1.296e-1429.63Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAP1B_CYPCA1.296e-1430.06Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
YPT10_YEAST1.692e-1430.77GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RHO1_YEAST1.692e-1432.53GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC31401E11EF CTVClemen1 Citrus clementina cDNA clone C31401E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875674 ID=FC875674; Name=FC875674; organism=Citrus clementina; type=EST; length=716bp
GACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATC
CAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGAT
TATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGAC
TACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAGATATGAAC
CGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGA
AAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGG
TCTTAGAGATGGATATTACATCCATGGGCAATGTGCTATCATCATGTTTG
ATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGAT
CTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGT
CGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGA
AGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTT
GAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTT
GCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATT
TGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAAC
TCTCCAGATGAGATGA
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