FC875674

Overview
NameFC875674
Unique NameFC875674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 583
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 583
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 583
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKL 583
            FK++++G+ G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A+++FD++    ++ V  W  DL           IP VL  NK D K  + Q  ++   F ++     ++E SAK N N ++   +L   +
Sbjct:   28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENI 194          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 583
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 49/169 (28.99%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   83 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCG----KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNL-QYYEISAKSNYNFEKPFL 565
            ++++ DY   K+V+ G  GTGK+  ++R +  +++ +   T+G++          G    +I+   WDTAGQEKF  +   YY     A++++DVT + +++ + +W  D+  +    I +VL G+K D++N RQV  ++   F  +K++   +E S+ +  N E+ FL
Sbjct:    2 DKESYDY-LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFL 169          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 51/160 (31.87%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 577
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++     R+  + Y E SAK   N ++ F  L R
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 173          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 51/160 (31.87%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 577
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++     R+  + Y E SAK   N ++ F  L R
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 173          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCW----DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            +KLV++G GG GK+    + +   F + Y+PTI        +   C      C     DTAGQ+ +  +RD Y   GQ  + ++DVT+R +++ +      + RV +N  +PIVL GNK D++N R+V + +     +  ++ + E SAK   N ++ F  + R++
Sbjct:    7 YKLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDS-----YRRQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREI 167          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAS1_DROYA (Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 49/164 (29.88%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD 592
            +KLV+VG GG GK+    + +   F   Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+ +  V  +Q     K+  + Y E SAK+    +  F  L R++  D
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKD 166          
The following BLAST results are available for this feature:
BLAST of FC875674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALB_PONAB4.924e-1429.01Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_MACFA4.924e-1429.01Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_HUMAN4.924e-1429.01Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
RAB32_PIG4.924e-1430.36Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RAB31_RAT4.924e-1432.12Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
YPT4_SCHPO6.431e-1428.99GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RRAS2_MOUSE6.431e-1431.88Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN6.431e-1431.88Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RASB_DICDI6.431e-1430.12Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAS1_DROYA6.431e-1429.88Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D ... [more]

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Properties
Property NameValue
Genbank descriptionC31401E11EF CTVClemen1 Citrus clementina cDNA clone C31401E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875674 ID=FC875674; Name=FC875674; organism=Citrus clementina; type=EST; length=716bp
GACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATC
CAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGAT
TATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGAC
TACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAGATATGAAC
CGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGA
AAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGG
TCTTAGAGATGGATATTACATCCATGGGCAATGTGCTATCATCATGTTTG
ATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGAT
CTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGT
CGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGA
AGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTT
GAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTT
GCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATT
TGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAAC
TCTCCAGATGAGATGA
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