FC875674

Overview
NameFC875674
Unique NameFC875674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875674_ssr681 microsatellite FC875674_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:5..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 57/186 (30.65%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 658
            FKL+++GD G GKT  + R     F   +  TIG+++          KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+++++V  KAK     R+  ++++E SAK+N N EK FL LA  +         ++P   P    +D+++
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI-------LRKTPVKEPNSENVDISS 188          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 54/182 (29.67%), Postives = 95/182 (52.20%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVESPALA 628
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N    Y+E SAK   N    F    R++    D + H +++  ++
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVS 189          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 54/178 (30.34%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVES 616
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N    Y+E SAK   N    F    R++    D + H +++
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQT 185          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 2
Query:   59 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 583
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 2
Query:   59 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 583
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 2
Query:   59 TNQLMALPN--QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 583
            T++  A PN   Q      FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:    2 TSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  107 SFKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 580
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D      +KN + +       ++  L++Y  S K + N  + F YLA K
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 168          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 53/188 (28.19%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  113 KLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG---DPNLHFVESPALAPPE 637
            K++++GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    ++  +  WH +  +          P +L GNK+D+    +R V  K+       K N+ Y+E SAK +YN +  FL +A+       + +++F   P  A PE
Sbjct:   10 KVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPE 197          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  110 FKLVIVGDGGTGKTTFVKRHLTGEFEKRYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 601
            FK ++VGD   GK+  + + +   F    + TIGVE        N  +I+   WDTAGQEKF  +   YY    CA+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +   F  K  L ++E SAK+  N    FEK    + +KL  +P L
Sbjct:   25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
BLAST of FC875674 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 2
Query:   98 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-RYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV--KNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 583
            D  + K +++GD G GKT+F+ ++ TGEF    +  T+G+ +       +  +++   WDTAGQE+F  +   YY      ++++DVT + TY N+  W  ++     E++ IVL GNK D     RQVK +      R+ N+ + E SAK+  N E  F  +AR+L
Sbjct:  187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQL 353          
The following BLAST results are available for this feature:
BLAST of FC875674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_CHICK1.210e-2030.65Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB9A_CANFA1.580e-2029.67Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_HUMAN2.064e-2030.34Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB5B_PONAB2.064e-2035.00Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE2.064e-2035.00Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN2.064e-2035.00Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB23_MOUSE2.064e-2031.10Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RAB7_SOYBN2.696e-2028.19Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB2B_DICDI3.520e-2035.47Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB26_DROME3.520e-2033.53Ras-related protein Rab-26 OS=Drosophila melanogas... [more]

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Properties
Property NameValue
Genbank descriptionC31401E11EF CTVClemen1 Citrus clementina cDNA clone C31401E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875674 ID=FC875674; Name=FC875674; organism=Citrus clementina; type=EST; length=716bp
GACTCCAACATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATC
CAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGAT
TATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGAC
TACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAGATATGAAC
CGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGA
AAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGG
TCTTAGAGATGGATATTACATCCATGGGCAATGTGCTATCATCATGTTTG
ATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGAT
CTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGT
CGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGA
AGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTT
GAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTT
GCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATT
TGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAAC
TCTCCAGATGAGATGA
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