FC875675

Overview
NameFC875675
Unique NameFC875675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10993 contig Ccv1_Contig10993:288..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK2_SYNY3 (Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC 6803) GN=pyk2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 67/193 (34.72%), Postives = 109/193 (56.48%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTL-GTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++I T   +G  VI AT ML+SM+  P PTRAEVSD+A A+ +G DAVMLS ETA GKFP++AV +M  ++ R E       + P+  +A +  +    +   + ++ TL   +I+  T+TG  A  +S +RP   I A T    + ++L L  GV P+ +       +TF  A+ + Q+   +++G+ V +
Sbjct:  268 KKLIATANRLGIPVITATQMLDSMVNSPRPTRAEVSDVANAILDGTDAVMLSNETAIGKFPVEAVAIMAKIAERIEQE----DINPSQAEASRTSIPNAISSAVSQIAETLNAAAIMSLTKTGSTARHVSKFRPKTPILAVTPHVDVSRQLQLVWGVKPLLVLDLPSTSQTFQAAINVAQENHFLRDGDLVVM 456          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYM_HUMAN (Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM2 PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24
Identity = 75/216 (34.72%), Postives = 118/216 (54.63%), Query Frame = 3
Query:    9 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMS-NTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYME------FSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNI 629
            +I  C   GK VI AT MLESMI  P PTRAE SD+A AV +GAD +MLSGETA G +PL+AV++ H ++   EA I    +   L +     +  +E  A  A   S      +I+V T++G  A  ++ YRP   I A T   +  ++  LY+G+ P+  +      +++D +   + A+ + + +G  K+G+ V +L +G +P   F +T  +
Sbjct:  313 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVL-TGWRPGSGFTNTMRV 527          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYM_PONAB (Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 72/216 (33.33%), Postives = 115/216 (53.24%), Query Frame = 3
Query:    9 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNH---MSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYME------FSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNI 629
            +I  C   GK VI AT MLESMI  P PTRAE S +A AV +GAD +MLSGETA G +PL+AV++ H ++   EA +    +   L +A  +    M  M           L  +++V T +G  A  ++ YRP   I A T   +  ++  LY+G+ P+  +      +++D +   + A+ + + +G  K+G+ V +L +G +P   F +T  +
Sbjct:  313 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSGVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFEELVRASSHSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVL-TGWRPGSGFTNTMRV 527          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYM_MOUSE (Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=Pkm2 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 75/216 (34.72%), Postives = 118/216 (54.63%), Query Frame = 3
Query:    9 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMS-NTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYME------FSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNI 629
            +I  C   GK VI AT MLESMI  P PTRAE SD+A AV +GAD +MLSGETA G +PL+AV++ H ++   EA I    +   L +     +  +E  A  A   S      +I+V T++G  A  ++ YRP   I A T   +  ++  LY+G+ P+  +      +++D +   + A+ + + +G  K+G+ V +L +G +P   F +T  +
Sbjct:  313 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDAVLNAWAEDVDLRVNLAMDVGKARGFFKKGDVVIVL-TGWRPGSGFTNTMRV 527          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_DROME (Pyruvate kinase OS=Drosophila melanogaster GN=PyK PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 3
Query:    9 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNL----GQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCP-IYME-----FSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQ 596
            +I  C   GK VI AT MLESM+  P PTRAE+SD+A AV +GAD VMLSGETA G++PL+ V  M       EA +    +  +L    G    +H + + A  A   +    ++IVV T +G  A  +S YRP   I A T   +  ++  LY+G+ P IY E     +  D +      L + +K G +K G+ V ++   +Q
Sbjct:  316 MIARCNKAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKGEYPLECVLTMAKTCKEAEAALWHQNLFNDLVRGAGTIDASHAAAIAAVEAA--TKAKASAIVVITTSGKSAFQVSKYRPRCPIIAVTRFAQTARQAHLYRGLVPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQ 519          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAW (Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAS (Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAN (Pyruvate kinase OS=Staphylococcus aureus (strain N315) GN=pyk PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAM (Pyruvate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pyk PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAC (Pyruvate kinase OS=Staphylococcus aureus (strain COL) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
The following BLAST results are available for this feature:
BLAST of FC875675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
KPYK2_SYNY32.031e-2434.72Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC... [more]
KPYM_HUMAN2.652e-2434.72Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=... [more]
KPYM_PONAB3.464e-2433.33Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2... [more]
KPYM_MOUSE3.464e-2434.72Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=... [more]
KPYK_DROME5.909e-2436.41Pyruvate kinase OS=Drosophila melanogaster GN=PyK ... [more]
KPYK_STAAW7.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAS7.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAN7.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAAM7.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAC7.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC31401E12EF CTVClemen1 Citrus clementina cDNA clone C31401E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875675 ID=FC875675; Name=FC875675; organism=Citrus clementina; type=EST; length=658bp
AGGAAGAGATAATAAGGACTTGTCGTAGCATGGGGAAAGCTGTTATTGTG
GCCACCAATATGTTGGAAAGCATGATTGTTCATCCAACTCCAACCAGAGC
AGAGGTCTCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGACGCCGTCA
TGCTTTCTGGAGAAACTGCTCATGGGAAGTTCCCATTGAAAGCCGTGAAA
GTAATGCACACTGTCTCATTACGGACTGAAGCAACCATAACAGGTGGTGC
AATGCCACCAAATCTTGGTCAAGCTTTCAAGAACCACATGAGCGAGATGT
TTGCATACCATGCGACCATGATGTCCAACACGCTTGGAACTTCCATCGTT
GTCTTCACTAGAACTGGTTTTATGGCTATATTACTGAGCCATTATCGACC
TTCTGGCACTATATTTGCCTTCACAAATGAGAAGAGGATTCAGCAAAGGC
TGTCTTTGTATCAAGGAGTTTGCCCCATCTACATGGAGTTCTCAGACGAT
GCTGAAGAAACCTTTGACAATGCCTTAGGTTTATTGCAGAAACAAGGAAT
GGTAAAGGAAGGAGAAGAGGTAGCACTTCTTCAGAGTGGCAGACAACCCA
TCTGGCGGTTCCAATCCACTCACAATATTCAGGTCCGNCAAGTGTAGACA
CAGAGCGG
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