FC875675

Overview
NameFC875675
Unique NameFC875675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10993 contig Ccv1_Contig10993:288..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAA8 (Pyruvate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAA3 (Pyruvate kinase OS=Staphylococcus aureus (strain USA300) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_TRYBO (Pyruvate kinase OS=Trypanoplasma borreli GN=PYK PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 3
Query:    9 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-------SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSD-----DAEETFDNALGLLQKQGMVKEGEEVALLQS 587
            I+  C  +GK VI AT ML+SM   P PTRAEVSD+A +V +GAD VMLSGETA GK+P++ V  M  +   T+ T+   A      +A KN  S        + S+ + +       +I+V T TG  A ++S YRP   I   + E  + + LS+ +G  P+Y +        D E+    A+ + ++ G+ KEG+ V  + +
Sbjct:  281 IMSKCNKVGKTVICATQMLDSMTHGPRPTRAEVSDVAKSVLDGADCVMLSGETAKGKYPVETVVYMSRICCETQVTMWNMA----AFEAIKNLQSFPLIPEEAICSSAVNSIFELHAKAILVLTNTGRSAHMVSKYRPPVPIICASQELDVCRLLSITRGTIPVYYDTEKLGPDYDREKRVGLAIDVGKQMGVFKEGDVVVAVHA 481          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_TRIRE (Pyruvate kinase OS=Trichoderma reesei GN=pki1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 73/170 (42.94%), Postives = 94/170 (55.29%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMS--EMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCP-IYMEFSDD 500
            +++I  C   GK VI AT MLESMI +P PTRAE+SD+  AV +GAD VMLSGETA G +P +++  MH  SL+ E TI   +    +    K  +S  E  A  A   S  LG   I+V + +G  A LLS YRP   IF  T      +   LY+GV P +Y E   D
Sbjct:  304 KKMIAMCNIAGKPVICATQMLESMIKNPRPTRAEISDVGNAVTDGADCVMLSGETAKGNYPAESIHEMHEASLKAENTIPYVSHFEEMCTLVKRPVSTVESCAMAAVRASLDLGAGGIIVLSTSGDSARLLSKYRPVCPIFMVTRNPTTSRFSHLYRGVYPFLYPEQKPD 473          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAR (Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVTNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAAB (Pyruvate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pyk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G +P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T  +   ++ S+  GV P+  +     +   +NA+    + G V  G+ + +
Sbjct:  260 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVTNGDLIII 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_METEA (Pyruvate kinase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=pyk PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 67/194 (34.54%), Postives = 107/194 (55.15%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-TSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALL 581
            + I R  R +GK V+VAT MLESMI  P PTRAEVSD+A AV EGADAVMLS E+A G FP++A+  M+ ++ + E      ++        +   S+  A  A  +   L   SI+ +T +G   + L+  RP+ ++ A T ++   +RL++  GV PI  + + D ++    A     ++   + G+ V ++
Sbjct:  258 KRITRVARRLGKPVVVATQMLESMITSPVPTRAEVSDVATAVYEGADAVMLSAESAAGDFPVEAIGTMNRIAEQVERDALYWSILMAQRSEPEPTASDAIAAAAHQIVEALSLRSIMAWTHSGSTVLRLARARPNASVIALTPKRETARRLTMAWGVHPIVTKDASDVDDMAFRAAKFAVRERFAEIGDRVIIV 451          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_CLOPE (Pyruvate kinase OS=Clostridium perfringens GN=pykF PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 64/193 (33.16%), Postives = 108/193 (55.96%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKN--HMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEV 572
            + II+ C   GK VI AT ML+SMI +P PTRAE SD+  A+ +G DA+MLSGE+A G FP++A   M  ++ + EA +    +   L     N    ++  +Y A+  ++   T +IV  T+TG  A +LS Y+PS  I A T  +++++ L+L  G+      + +  +E  + A  + ++  + + G+ +
Sbjct:  260 KNIIKKCNQAGKIVITATQMLDSMIRNPRPTRAEASDVCNAIFDGTDAIMLSGESASGSFPIEAAMTMSRIAKKAEANLDYNYLLRRLKDPNPNPDAFADAISYSASKTASKFPTKAIVAATQTGSTAKILSKYKPSCPIIAITPYEKVRRSLALNFGIISKKCAYFNSTDEIIEEARKVAKEFEIAETGDNI 452          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK_STAS1 (Pyruvate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pyk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 68/204 (33.33%), Postives = 103/204 (50.49%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS------------IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVAL 578
            +++IR C  +GK VI AT ML+SM  +P  TRAE SD+A A+ +G DAVMLSGETA G++P +AVK M  +++  EA            Q +K  +S+      T + N +G S            IV  T +G  A  +S YRP   I A T      ++ +L  G+ P+  E     +   +NA+    +   V+ G+ + +
Sbjct:  261 KDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGQYPEEAVKTMRNIAVSAEA-----------AQDYKKLLSDRTKLVETSLVNAIGVSVAHTALNLNVKAIVAATESGSTARTISKYRPQSDIIAVTPNAETARQCALVWGIFPVVKEGRKTTDALLNNAVATAVETERVQNGDLIII 453          
BLAST of FC875675 vs. ExPASy Swiss-Prot
Match: KPYK1_AGRVI (Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = 3
Query:    3 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEA----TITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRQ 641
            +E+IR CR   K VIVAT ML+SM+  PTPTRAE SD+A A+ +GADAVMLS E+A G FP++ V++M  +  +TE          A  P +     + ++   A  A  +   +   IV FT +G  A  +S  RP   I A T  ++  ++L L  GV  +     D  E++ D A     + G+ ++ +++ ++     P     ST+N++V Q
Sbjct:  261 KELIRACRIAAKPVIVATQMLDSMVTSPTPTRAEASDVAGAIYDGADAVMLSAESATGAFPVETVEIMSRIIEKTEKHKFYRPILEATEPQIAHTPPHAVATAAADVALALKAPV---IVAFTVSGTTASRISRARPPLPILALTPSEQTARQLGLMWGVVSLLSPTVDTYEQSVDRATQAAVQTGLAEKSDQIVVVTG--FPFATAGSTNNLRVTQ 472          
The following BLAST results are available for this feature:
BLAST of FC875675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
KPYK_STAA87.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAA37.717e-2433.82Pyruvate kinase OS=Staphylococcus aureus (strain U... [more]
KPYK_TRYBO1.008e-2335.12Pyruvate kinase OS=Trypanoplasma borreli GN=PYK PE... [more]
KPYK_TRIRE1.008e-2342.94Pyruvate kinase OS=Trichoderma reesei GN=pki1 PE=3... [more]
KPYK_STAAR1.008e-2333.82Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAB1.008e-2333.82Pyruvate kinase OS=Staphylococcus aureus (strain b... [more]
KPYK_METEA1.008e-2334.54Pyruvate kinase OS=Methylobacterium extorquens (st... [more]
KPYK_CLOPE1.008e-2333.16Pyruvate kinase OS=Clostridium perfringens GN=pykF... [more]
KPYK_STAS11.316e-2333.33Pyruvate kinase OS=Staphylococcus saprophyticus su... [more]
KPYK1_AGRVI1.316e-2334.10Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401E12EF CTVClemen1 Citrus clementina cDNA clone C31401E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875675 ID=FC875675; Name=FC875675; organism=Citrus clementina; type=EST; length=658bp
AGGAAGAGATAATAAGGACTTGTCGTAGCATGGGGAAAGCTGTTATTGTG
GCCACCAATATGTTGGAAAGCATGATTGTTCATCCAACTCCAACCAGAGC
AGAGGTCTCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGACGCCGTCA
TGCTTTCTGGAGAAACTGCTCATGGGAAGTTCCCATTGAAAGCCGTGAAA
GTAATGCACACTGTCTCATTACGGACTGAAGCAACCATAACAGGTGGTGC
AATGCCACCAAATCTTGGTCAAGCTTTCAAGAACCACATGAGCGAGATGT
TTGCATACCATGCGACCATGATGTCCAACACGCTTGGAACTTCCATCGTT
GTCTTCACTAGAACTGGTTTTATGGCTATATTACTGAGCCATTATCGACC
TTCTGGCACTATATTTGCCTTCACAAATGAGAAGAGGATTCAGCAAAGGC
TGTCTTTGTATCAAGGAGTTTGCCCCATCTACATGGAGTTCTCAGACGAT
GCTGAAGAAACCTTTGACAATGCCTTAGGTTTATTGCAGAAACAAGGAAT
GGTAAAGGAAGGAGAAGAGGTAGCACTTCTTCAGAGTGGCAGACAACCCA
TCTGGCGGTTCCAATCCACTCACAATATTCAGGTCCGNCAAGTGTAGACA
CAGAGCGG
back to top