FC875676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 1.039e-68 Identity = 131/179 (73.18%), Postives = 147/179 (82.12%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKN 650 +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIR SF T+KW+D+VR ERG DVIIVLVGNKTDL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K LFRKIA ALPG+ + +Q N Sbjct: 7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPN 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 6.734e-68 Identity = 129/167 (77.25%), Postives = 143/167 (85.63%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 620 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL +KRQV+ +EGE K++ELNVMFIETSAKAG+N+K LFR+IA ALPG+ Sbjct: 8 LKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.166e-66 Identity = 126/173 (72.83%), Postives = 143/173 (82.66%), Query Frame = 3 Query: 117 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS 635 +L K+KLVFLG+QSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF+NT KWI++VR ERG DVIIVLVGNKTDL +KRQV+ EEGE K++EL +M +ETSAKAG N+K LFRKIA LPGME + + Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVET 180
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2) HSP 1 Score: 240.35 bits (612), Expect = 8.518e-63 Identity = 125/203 (61.58%), Postives = 145/203 (71.43%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEVYTGMHHSPVSVSGCSVMHP 728 L K+KLVFLG+QSV KTS+ITRF YD FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIR SF T+KWID+VRTERGSDVII LVGN+TDL +KRQVS+EEGE K++ LNV FIET AKAG+N+K LFR++AAALPGME+ +++ VS GCS P Sbjct: 11 LRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSRED--MSDIKLEKPQEQTVSEGGCSCYSP 211
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2) HSP 1 Score: 215.698 bits (548), Expect = 2.247e-55 Identity = 113/185 (61.08%), Postives = 136/185 (73.51%), Query Frame = 3 Query: 117 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEV 671 +L K KL+FLG+QSVGKTSII+RFMY+ F QAT+GIDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIR SF T KW++ VR ERG DV+I+L+GNK DL KRQV+ E+GE KSR LNVMFIETSAK G+N+K LFR++A+AL + T +S K G E E+ Sbjct: 28 SLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASAL--LSTRTSPPPKEGTVEIEL 210
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.902e-54 Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 3 Query: 117 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSS 635 +L KYK+VFLG+Q VGKTS+ITRFMYD FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIR R+SF KWI++V+ ERG + VI+ +VGNK+DL ++RQ+S EEGE K++ L +F+ETS KAG+N+K LF+KIA +LP + S Sbjct: 7 SLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSES 181
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.120e-38 Identity = 87/144 (60.42%), Postives = 101/144 (70.14%), Query Frame = 3 Query: 294 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEVYTGM---HHSPVSVSGCS 716 TAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ RE + + PV+ GCS Sbjct: 1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS-----REDMIDIKLEKPQEQPVNEGGCS 139
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32 Identity = 66/175 (37.71%), Postives = 106/175 (60.57%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSN 638 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E S++ Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTS 190
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185 The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bpback to top |