FC875676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 3 Query: 132 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + SF KW+ E++ + ++++ L GNK DL++ R+VS EE E ++E ++ F+ETSAK N+K +F +IA LP ++ Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQ 175
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEVYTGMHHSPVSVSGC 713 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F W+ E++ + +++I L GNK DL KR V +E +A + + +++F+ETSAK N+ +F IA LP E ++ + R ++ +SP S S C Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDL---QENSPASRSQC 213
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F W+ E++ + +++I L GNK DL KR V +E +A + + +++F+ETSAK N+ +F IA LP E Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +SF W+ E++ + +++I L GNK DL KR V +E ++ + + +++F+ETSAK N+ +F IA LP E Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185 The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bpback to top |