FC875676

Overview
NameFC875676
Unique NameFC875676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10292 contig Ccv1_Contig10292:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++WDTAGQER+ SL P Y R             +++F     W+ E++ +    ++I L GNK DL  KR V  EE +A + + +++F+ETSAK   N+  LF  IA  LP  E
Sbjct:   16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  132 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R             + SF    KW+ E++ +   ++++ L GNK DL++ R+VS EE E  ++E ++ F+ETSAK   N+K +F +IA  LP ++
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQ 175          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEVYTGMHHSPVSVSGC 713
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R               +F     W+ E++ +   +++I L GNK DL  KR V  +E +A + + +++F+ETSAK   N+  +F  IA  LP  E  ++    +  R  ++     +SP S S C
Sbjct:   19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDL---QENSPASRSQC 213          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R               +F     W+ E++ +   +++I L GNK DL  KR V  +E +A + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/168 (37.50%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623
            + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL  KR V  +E ++ + + +++F+ETSAK   N+  +F  IA  LP  E
Sbjct:   18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185          
The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_HUMAN5.954e-3238.24Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RHA1_ARATH7.776e-3240.24Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB5C_CANFA1.732e-3134.85Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5C_BOVIN1.732e-3137.50Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5A_PIG2.263e-3137.50Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE2.263e-3137.50Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA2.263e-3137.50Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN2.263e-3137.50Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA2.263e-3137.50Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN2.263e-3137.50Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]

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Properties
Property NameValue
Genbank descriptionC31401F01EF CTVClemen1 Citrus clementina cDNA clone C31401F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bp
AACACTGAACAGAGTCTTGGCTTTACTAAAATTGCTTCAGCTTATTAAAC
AAATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAA
AATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAG
ATCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAA
TTCGATAACACCTATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAAC
TATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTG
GACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCT
GTTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACAC
TTCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCA
TTGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCC
ATAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGA
AACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTG
CTGCAGCATTGCCAGGGATGGAAACACTTTCTTCAAACAAGCAGAAGAAT
GGTTGACGTGAATCTGAGGTCTACACTGGCATGCATCACAGTCCAGTCTC
AGTCAGTGGATGCTCTGTGATGCATCCTGGACGCTGGTGCTATGTCCTCC
AGCTATTAGTCTTCGACTT
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