FC875676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F W+ E++ + +++I L GNK DL KR V +E +A + + +++F+ETSAK N+ +F IA LP E Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F W+ E++ + +++I L GNK DL KR V +E +A + + +++F+ETSAK N+ +F IA LP E Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F W+ E++ + +++I L GNK DL KR V +E +A + + +++F+ETSAK N+ +F IA LP E Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 67/162 (41.36%), Postives = 102/162 (62.96%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFRKIAAAL 611 +KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQERFR++ SY R R SFL+ WI++VR GS+++ +L+GNK+DL E R+VS+ E ++ + +++ IETSAK N++ F ++A L Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.598e-31 Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RES 665 +KL+ +GD VGKT ++ RF D F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y R +SF N WI + SDV +++GNK D+ EKRQVS E GE + + + F+ETSAK+ N++ F +A + M L+ +N +E+ Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDI--MTKLNKKMNENSLQEA 185
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.123e-30 Identity = 61/164 (37.20%), Postives = 105/164 (64.02%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 620 +K+V +GD VGK++I++RF + F ++TIG++F +K++ +E +T++ Q+WDTAGQER+R++ +Y R RQSF N +W+ E+R S ++I++VGNK+DL+ R VS +EG+A + + + F+ETSA N++ F+ I + G+ Sbjct: 13 FKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGI 176
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30 Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611 +KL+ +GD SVGK+ + RF D + ++Y +TIG+DF +T+ +E +TV+LQ+WDTAGQERFR++ SY R +SF N +W+DE+ V +LVGNK DL E R V +A ++E+ + F+ETSAK N++ F ++AA+ Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAI 169
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30 Identity = 61/168 (36.31%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 623 + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +F+ W+ E++ + +++I L GNK DL KR V ++ + + + +++F+ETSAK N+ +F IA LP E Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.915e-30 Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 3 Query: 114 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RES 665 +++ KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQERF SL P Y R QSF+ W+ E+ + D+II LVGNK D+++ +R+V+ EEGE + E ++F ETSAK G N+ +F I +P ++T + RES Sbjct: 3 TSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP-LKTAEEQNSASNERES 188
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.915e-30 Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = 3 Query: 129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQK 647 +KL+ +GD SVGK+ ++ RF D + ++Y +TIG+DF +T+ + +T++LQ+WDTAGQERFR++ SY R +SF N +W+ E+ V +L+GNK D+VE + VS E G A + EL + F+ETSAK N++ F IA + +N K Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANK 181 The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bpback to top |